Chr:
Chr8
Start:
20230562
End:
20231067
Strand:
+
Ref_name:
OSA-LNCN7266
Sequence
(OSA-LNCN7266.1):
AAAAUAAUAAUGAGAGCUUAAAGUACAUGAUUUGAUAUAUGUUUGGUUGUCUGGUCUCGCCAGAGCUACCUAGCGAAGAAUCCAAGUUGAUUAUUUUUUUUAGAAUUACGCAGUAUAACGCAGACACUCACAACGCACGCGCACUCACCCUUAUGAGCAUCUUCGAAGACUGGACCGGCAAAUCCUGGAGAGAUGACACUCACAACGCACGCGCACUCAUCCCUAUGAACACACGCACGCAAACCCUACCCCUAUGAGCAUCUUCGAAGACUGGGCCGGCAAAUCCUGGAGAGAUGGAGAGAUUGACGAAGUCACCACAGGUGCCUCGCUAUCGACGGGUACGUCUGACGAAGUCACCACAGGUGCCUCGCUGUCGACGGGUACGUCGCCUACCACUGAAAGCACAACGCCGUUAAAUCCUGGAAAAUUCGCUCCCAUAGGGAGUCGAACCAAGGAUCUCAGGUGCUACUGAGGCUCUUGUAACCACCAGGCUACAGACCCUUUCG
Sequence
(OSA-LNCN7266.2):
AUGAUUUGAUAUAUGUUUGGUUGUCUGGUCUCGCCAGAGCUACCUAGCGAAGAAUCCAAGUUGAUUAUUUUUUUUAGAAUUACGCAGUAUAACGCAGACACUCACAACGCACGCGCACUCACCCUUAUGAGCAUCUUCGAAGACUGGACCGGCAAAUCCUGGAGAGAUGACACUCACAACGCACGCGCACUCAUCCCUAUGAACACACGCACGCAAACCCUACCCCUAUGAGCAUCUUCGAAGACUGGGCCGGCAAAUCCUGGAGAGAUGGAGAGAUUGACGAAGUCACCACAGGUGCCUCGCUGUCGACGGGUACGUCGCCUACCACUGAAAGCACAACGCCGUUAAAUCCUGGAAAAUUCGCUCCCAUAGGGAGUCGAACCAAGGAUCUCAGGUGCUACUGAGGCUCUUGUAACCACCAGGCUACAGACCCUUUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.76%
ME_num:
MEP:
10.57%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
23.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.59739484520716 | 0.0183843724127761 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.69284975468923 | 0.0119495159848191 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.84329792248702 | 0.00870244710807396 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.1008363540356 | 0.0415205952432723 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.26715609553726 | 0.0339346411778359 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -4.68142232369034 | 0.0235937678675712 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.98208589712337 | 0.024446808047863 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.40910915370785 | 0.0352483975752484 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 4.57467215744598 | 0.00320526312837534 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.65492225463345 | 0.0101758502112123 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.12852970273677 | 0.00422711723563388 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.5535765865606 | 0.018769967971341 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.40995381112897 | 0.0325330722254317 |