Chr:
Chr8
Start:
20091248
End:
20092073
Strand:
-
Ref_name:
OSA-LNCN7265
Sequence
(OSA-LNCN7265.1):
CCCGUGGUCGCAUCGCCGCCUCGCCGCUUCGCCUGCCUUCCUCGCCCGCGCCAGGCCGCCGCCACGCCAGGCCGGAGAGGCGCCAGGCCGCCGUGAGUGGGGAGGGGACUGGGCGGCUGCCUCGCAGCUUCGCCUCCCUCGCCCGCGCCAGGCCGCCGCCGCCGCGCCAGGCCGGAGCUAGCUAGGAGCCGCCACCACCGCAAGUGGGGAGGGGACCGGGCGGCGGCCGCGCGAUGCCGGGGCUGACAGGCUGGGGGCCUGCCCUGCCACCGUGGCCCUUGGCAAUGGAGGCGGCCGGCCGACGGGGUGCCCAUGGGGCGACGGUGCCCUUGUCUGAAAUAUGUUGAAAAUACUGAUGAACACAGUACCAAAUAAUUCAUCUCUGAAUUUGUAUUCCAAAUAAUUCAUCUCUUUUUUGUACAUUGUGUCUUGAUUUUGUGAAAUGAGAAAUAUAUCUUGCUUAUCUUGUAUCCAUGGCAUUUCAAACAGAUUAAACCAUGUGAAAAUUGGGCUAUGCAAUUGCUUCAAGUGACUGAACUGAACUUUGUGAGACAAAAUCAUUUUCAGGUUUAGCUUGAACUGAAGGGAAAUCCAGGACAGGAGUUGCCAGUUUCUAGCUGCUUACAAUCAGGCUAAUGUCAGUGGCAUCGAAGCGAACACCGUGACCCUUGGCGAUGGAGGCGGCCGGCCGUCGGGGUGCCAAUGGAGGCAAUGGUCUUCGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.75%
ME_num:
MEP:
62.4%
HE_num:
HEP:
15.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
14.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.71080793329484 | 0.000773762226817953 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.0280234534348 | 0.000217853044346994 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.42632975671754 | 0.0200770777116668 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.38454860719674 | 0.0219142134715553 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.05574513105791 | 0.0277113372593129 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.41265641008072 | 4.60507160779767e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.21877377297507 | 0.0295606481518218 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.43469056113846 | 6.28714574762039e-52 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.32979733139646 | 0.0043020507067437 |