Chr:
Chr8
Start:
19942935
End:
19948643
Strand:
+
Ref_name:
OSA-LNCN7261
Sequence
(OSA-LNCN7261.1):
GAAAGAUAACUUAUUCUUAUAGUCUUAGAUGUACAAAGACUACAAAUAUAAUCAUCUUAUUUAGAACAAUCAGAAAAUAAAAUAUGCAUAAGACUUUUGGAUGGAGGAAGUAAUAGCGAAGUGAAAAUACUUUUUCUUUUUUCGCAUUGAGCUCUGCUCAAGCUUAAUUUUUCACUGCGAACUAUACAAAACCGGUUAUUUUUCGCCAUCAACUUUCAAACCUAGAAAAGAAAAUCUAAACAUGUUUUCAGUUGUUAUGUUCGGAAUAAAGGUGGUAUUCUUAGUACAUAAUGCUAUUAGCAUAUUUUACCGAUAUAGGUAUCACUAGGGAUGAAAAUGGUCGGAAACGAUCGAAAAACAGCCUCAACCAUUUCCGUAACCAUAUUUUUCUCGAAAACGAUAUCGGAAAUAUCGGAAAACCGGAAACGGAACAAUACAGACGGAAACAUGUCGGUACAGAUCGGAAACCGGUAACAAAUACGAAAAUAUUAAACUAUAAAAAUAUAUAUUUAACUUUACAUAAGUAUGUUAUAUGUAUACAUAAAUUCAAGCUUACACUAUAUAAAUUAUAAAUUAACUUCAUUUUAGCCAUGUAUAAAAUUUAGAGAUUUGAUUGAAGAGUCAAUCAAUCUGUAAGUUUUGGGUCAAGUAUAGACAUGCCCUAUAAAUAUCGACAUAUUUAGAAUACGGUAAUUACCACAUUAUAAGAAACAGUAAUUUCUACAAGAAUACGGUAAAUACGGAAACCAUCGGUAUAACAGCAAAACCAUUUCCGUUUUCAUUUCCAUAUUUUUUUACCAUUUCUAUUUUUGUUUCGGUCGAUUACCAUUUCCAUAUGGCUCGGCCGGUAGAAAGUCGAAAACGAACGCCGGUCGACCGGUAAUUACCGUUACCGUUUUCACCCCUAGGUAUCACGUAGGUAGGUUCACAACUUAUAAAACUUAAGUAACUGAGUUCAUGCAUGUUAGCGGAAAAACACGGUCAUAUUGAUCAAAGCCACCUUGGAACAUAUUUUAGGAUAUGAUGUAGUAUCUGGUUUUAAAAGUUUAGAGUGAAAAAUAAUUGGUCUACGGAUCAUUAUGAAAAAUGGACAUUGAGCGAAUUUUGAGGACAACAAAUAAACUUCACUGUAAUAACUUAAAAAAAACUACUGUAAUACCGGUAUGGUGUGAAUCAUGAUAAGAGAUGGGGUCCUACAAAAUAGGUUGAGAGUUUAACAUCCUCGUGGAGCCCACAAGAGAAAUUAUUUAUAAAAAAAACUUUGUCUUCUUCCACUGAUGCCUCAUCCCUCCUUGUCUCUCUCAGUCAAUCUAAACCACAUCAAAAUCAUGGGACCCUAUACAACCAGUAUUGAUUGAUUUCAUCAUCAACCACCGAAAAUCGGACCCUAUACUACCAUGGUCUUACUCCUACAUCUAUCAUCUUCCUCCUUGAUUUGUUCUUUUAGAGUUCUAAUUUAAAGAAGAAAUUUGAGUAAGUAUUAUUUAAGCCUUGCUAUAGCCUAUAGGAGCUCCAAUGGCCAAACUCUGCACCAUGAUUAAUUGUGCUCCUGCAUCCCGGGGUGUGGCCAGGUCACGAGUAUCUCAACUUUACUAUUCAUUUUCACUCGAUCCUAUUAAAUCUUUGAUGUGACCAUGGCUACUACGGAUACAUCCGUUGCUCACAUCAUGGAUGAACAACAAGAUAUCAAGUUCGAGUCCUCCAAGUGCCAAAAUCCAAUUCGGCCACCUGCUACACUGCUAACUUCAAACGGCCGCCGAAGCUCCAUACGACCUCCGUUUUCGGCCCGUGAGUACUUGAUGGAAAGCUCUCGGAGUCCUCUUUCCAAUGCAUCAAACCUCAUUGCCAAAUUCCAUCUCAGUCGGCAGCAACUGAAGAAACAAGGUGCUGCGACACCUGUAAUGGGCCUAUGGGCUUGUAACUUCAUUUGGGACCCCGGCCCAGGUGGGGCCCAUGUGGGGUGCGCCCCAAGCUGGUGGAGCACGACCCUAGGCACCCCUAGGUCGUCCUCCCACCCCUAUAUAUAGCUAGUUACCCCUUCAGGGUUUCUGGGGGGUUUUGUUAGAUUAAAGUUUAGCCAUUGCUACUUGCUUGCAGCGCGCGUGUCGGCUAGACCGUCCGUCUGCUUGUUCUUCGGAACCCCAACUUAUCAUUUGUAUUAAAUUCCUAUUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.94%
ME_num:
MEP:
15.85%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.32168543651737 | 0.000940764973529284 |
2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.36687779170017 | 0.0339218769635839 |