Chr:
Chr8
Start:
19620862
End:
19621601
Strand:
+
Ref_name:
OSA-LNCN7250
Sequence
(OSA-LNCN7250.1):
UUUUAUCUCUUUAAAAUAUGUUUAUAGCUGGCUUAUAGCCUGCUAUUGUACCUGCUCUUAUCCACCCACCUCUCCAGAAUAAAAAUAUCUCCAACUCUCCUCCUCCCCCUCCAGAUCCAGAUCCAGAUCUUCUCUAGCACCCACCUCUCCUUUCCUCCUCCCUUCUACAGAUCCACGGCGUCGGCGUCCUCUCCUCCUAGGCAGCGUCGGCGGCGGUGGCUCCGGCAGCUGUGCGCGGUGGCGACGAGAGACGGUCGUCGGGGGGGGGGGGGCGUGGCGACGGCGACGGGAGGAGCCGUCGUGGGGCGCGACAGUGACUGCGACGGGAGGUGGGGGCACGGCGACGGCGACGGGAGGAGCCAUGGGGGGGCAACGGUGACUGCGAAGGGAGGCGGGGGCGUGGCGACAGCGAUGCGACUGCAGCGGCGACGGGGGGCUUGGUGCGGCAGAAGGAGCUCGGAGGCAGUGAUGCUCGGCAAUGGGGCUCACACAUCCGGUGCUGCUCGGUCGGCGACGGCGACAACGACCUCCUUCCUCUCUUCUGUUGAUGCUGUUUUUCUUUUUUUUUAUGUUCAAAAUGCUUGUAUGCUGUGUUCACUUCCAUGUUAACUGAAUCUAAUGAACUCUGGAUGAGGAUUUAAAUCGAUGCUCAAAAUUUUGGAUGUGGAUUUGAAUCUGUACAUGCUGCGAAAAUCUGAUUUAUUUUCUUUUUUUUUGGCGAAAAGAGAUUUUGGGGAUUA
Sequence
(OSA-LNCN7250.2):
UCCUUUCCUCCUCCCUUCUACAGAUCCACGGCGUCGGCGUCCUCUCCUCCUAGGCAGCGUCGGCGGCGGUGGCUCCGGCAGCUGUGCGCGGUGGCGACGAGAGACGGUCGUCGGGGGGGGGGGGGCGUGGCGACGGCGACGGGAGGAGCCGUCGUGGGGCGCGACAGUGACUGCGACGGGAGGAGCCAUGGGGGGGCAACGGUGACUGCGAAGGGAGGCGGGGGCGUGGCGACAGCGAUGCGACUGCAGCGGCGACGGGGGGCUUGGUGCGGCAGAAGGAGCUCGGAGGCAGUGAUGCUCGGCAAUGGGGCUCACACAUCCGGUGCUGCUCGGUCGGCGACGGCGACAACGACCUCCUUCCUCUCUUCUGUUGAUGCUGUUUUUCUUUUUUUUUAUGUUCAAAAUGCUUGUAUGCUGUGUUCACUUCCAUGUUAACUGAAUCUAAUGAACUCUGGAUGAGGAUUUAAAUCGAUGCUCAAAAUUUUGGAUGUGGAUUUGAAUCUGUACAUGCUGCGAAAAUCUGAUUUAUUUUCUUUUUUUUUGGCGAAAAGAGAUUUUGGGGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.85%
ME_num:
MEP:
3.05%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.94
Avg Expression:
4.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 8.96336154931037 | 8.35166086403672e-05 |
2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 9.42451313053852 | 1.10955982645713e-10 |