Chr:
Chr8
Start:
19463660
End:
19469823
Strand:
+
Ref_name:
OSA-LNCN7241
Sequence
(OSA-LNCN7241.1):
GCGACCUCACCUUGUAAUCCACGCAGUCGAGCUCGUCGCCGUCGCUCGUCGCCACACGCCACCUCGUCAAAUGUGGAGUAUACAGGGGUGCCAUGGCCGCCGGUGGUGCAAGAACACCGAAGAAGAAGCUGAGCUAGCUACGGCGGCGGCGAUGCACAUAAUCAGAUCAGCAACUGCAAUACCCUCUGAUCUGCAGCCGAGUGAUCUUUGCCGCCUCCGCGCGGUGCGUGUCGGCCUACACGACAUGCUUCAAGAGUGCUGCUUCCUCGCCUCCAACCUCUCCUCCUCCGCCGCUCAGGCCCAUCGGAGGCCCCUCGUCGCCGGUCCUCCAGAGCAGCCACCGCCGGCCACCACUACAAUCGUGCGCCACCGGUCGCAUUUGGGGAAGGAGAAGGGGAAGAUGGAAAAAGAGAAGGGGAGGAGAUAGAGAAGAGAGAGGAUGAGGUGGAGGAAGUGGCCCACUAGCAUGUGGCUCCCAUAUUUUUUUAAUAUUAUUGUUUGACUGACAUAUGGGCCUAUAUAUUCUGUUUUAAUUUUUAAAUUGUUAAAUUUUGCUUCAUGUGUCACAUCAAUACCAAGUCGGAUGAAGACCUUCUCAAAUUAUCCACAUUGGUGCCACGUCAGCUGAAAUCACGUCCAGUCCGCCUGAGACCUAUAUUGCACUAGUUCUGAUAGUUGAGAGAUCCAUUGUAUUGUUAACGCCAGAAUUUGGUAAGUCCGAAGUCAUCAUCGGUCUAGGGUCAGUAUCGGCUUCAGAGUCUUGGAAUUGGUCGAUGGGAGUUAUCAAGUCGCCAGCAGUCGGAUUCUUAGAGGAUUCGGUUAAGGAAAUUAAUCAAAUCAAGGAAGCUUAUCCAGAAGAGACCGAGUUAAAGAAGGAUGCGGCAUGACAGUUUAUCUAUUAAUUAGGCAAUAUUUAUUAGUUUCCUUUUAUCUUUAGGAAAGUGUGUUUAGUGUCCGAUAAGGACUUUAUGUUUUCUUUUUAUCUUUAGGAAAGUUUCUUUAUUGUCUUACAAGGACUAGUAUCUACCCAUGGGUAUAAAUAUGUAUACCCGGGGUCAACGUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
2.24%
HE_num:
HEP:
97.56%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.54
Avg Expression:
37.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.14344387384212 | 3.10218366970534e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.12964464800581 | 0.000395232660346035 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.23833606539867 | 5.71648860225901e-06 |