Chr:
Chr8
Start:
19426593
End:
19433451
Strand:
+
Ref_name:
OSA-LNCN7240
Sequence
(OSA-LNCN7240.1):
GUCCGUGAUAAAACAUAUAAAAAGGCGAAAAAACAUAUAAAAAGAAAAAAAAGGAAAGUCCGAGUCAUCAAUGACGCGGAGAAAAAAACCUCUGUCCGUGAUAAAAAAAAAGGGCGAAUUUUUUUGUUCUUCACGGAGAAUCUAAAAUAAUCAUCCAAUCGGACAAUUACACAGGUCGAGAAUCCUAGAAAAAGGAAAAAAAAGAGAGGAAAAAAAUCACACAGAUGAGUAAGCUUGCCGUCAAAUCCGGUUGUUCCGAGCUGGUCGCCAUCGCCGCCGACCGCGCUCCUAUCGUGGCCUCCCCGCUGGGCACGACCACACUCGGCACAUCCCAACCCGCGCUGGCACCCCCUCCCUCUACCUGGUGCCCCGCCCUCCAGCGCUCUCCUCUUGCUUGGAGUCAGAGGAGAGAAAGAGAGACGGAUGGCCAUCGUCGAGGUCUCCGCGCCGUAGGCUCGUAGCCCCGCCAUUGAGGCCGAUGGGGAGAGGGGAAGGGGAAGGAUGGUCGUCGCCGUCGUCGUCGUCGCCGUCGUACCCUUGCCGUCGCGGCACUGCGUCGAGCACUCGCUGACGCGUGCCAUGCCGGCGAAACUGGAAGGAGAGAGGGAGAAGGAACGUCCCCGCCGGUGGGGUAAGGAGGAGUGUCGCCGCUGAUGGGGGAGGGGAAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.86%
ME_num:
MEP:
32.52%
HE_num:
HEP:
63.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.78
Avg Expression:
47.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.19876258656612 | 0.00972707989647243 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.61379983757219 | 0.0491724023539117 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.83774243672513 | 0.0372742874076193 |