RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7238

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

19383483

End:

19386034

Strand:

-

Ref_name:

OSA-LNCN7238

Sequence
(OSA-LNCN7238.1):

CAAGAACAGUGUGAGAGUGCGUGAGUGAGUAGCUGUGAGAGCAACCAAAGAAACAGCAUCAUCGAUCUCACUCCAAAAGCAAUGGCAGUAACAGACUAACAGUCGUAACUCGUAACAGCAACAGCAACAAUGGAGUAGAGAGAAACAGAGAGAGAUGGCGAUGCAUCAGUGGCUAGUCUGAAUCUGCAAAGGAGGCACAAAGUCUCCAUUAUCUCUUCUGCAGAUUUCAGAAGGCACUGGCGCCAUGGGCGUAUUGGUGGUGGUGGCUGCUGCCUGCUGCUUCUGCAGAAGAAGAAGAGCGCACCUUGUGGCCGCUGCUCCACUGUUCUCCCAGCGGCAUAGUCCUUUCUGUUUCUUUAUUUGGGCGUAAAUGGUGUUACUGUAACGCUCGCGGCACCUUCAGUUUUCACUUCACCGUAAACGAGGCAAGCAGAGAGUUAUUAUCAUUACUUCCUAGAGUUACUACGGCUCAACGUUCUUCAAAUCCUAAAAUUUUUAAUGGUCAAAGACCUCAAAAUUCUCUUGAAAAGAUGUACUAUAAGAAUUUCAAAUGGUUGUUUUCUUUUUAAAAGGAGAAAAGGUGAAUUGAGCGUAGUUAGUACUUGCAAGGAUUCAUUGCAGGUGCAAAAUGGUGGUAAGAUCAGUGGUAGUAAGUGGUAAGAAUUUUGUGUGCAGAACAGAGAGGAGAGCAACGAGCAGAGUAGACG

Sequence
(OSA-LNCN7238.2):

CAAGAACAGUGUGAGAGUGCGUGAGUGAGUAGCUGUGAGAGCAACCAAAGAAACAGCAUCAUCGAUCUCACUCCAACAACAGCAACAAUGGAGUAGAGAGAAACAGAGAGAGAUGGCGAUGCAUCAGUGGCUAGUCUGAAUCUGCAAAGGAGGCACAAAGUCUCCAUUAUCUCUUCUGCAGAUUUCAGAAGGCACUGGCGCCAUGGGCGUAUUGGUGGUGGUGGCUGCUGCCUGCUGCUUCUGCAGAAGAAGAAGAGCGCACCUUGUGGCCGCUGCUCCACUGUUCUCCCAGCGGCAUAGUCCUUUCUGUUUCUUUAUUUGGGCGUAAAUGGUGUUACUGUAACGCUCGCGGCACCUUCAGUUUUCACUUCACCGUAAACGAGGCAAGCAGAGAGUUAUUAUCAUUACUUCCUAGAGUUACUACGGCUCAACGUUCUUCAAAUCCUAAAAUUUUUAAUGGUCAAAGACCUCAAAAUUCUCUUGAAAAGAUGUACUAUAAGAAUUUCAAAUGGUUGUUUUCUUUUUAAAAGGAGAAAAGGUGAAUUGAGCGUAGUUAGUACUUGCAAGGAUUCAUUGCAGGUGCAAAAUGGUGGUAAGAUCAGUGGUAGUAAGUGGUAAGAAUUUUGUGUGCAGAACAGAGAGGAG

Sequence
(OSA-LNCN7238.3):

CAAGAACAGUGUGAGAGUGCGUGAGUGAGUAGCUGUGAGAGCAACCAAAGAAACAGCAUCAUCGAUCUCACUCCAACAACAAUGGAGUAGAGAGAAACAGAGAGAGAUGGCGAUGCAUCAGUGGCUAGUCUGAAUCUGCAAAGGAGGCACAAAGUCUCCAUUAUCUCUUCUGCAGAUUUCAGAAGGCACUGGCGCCAUGGGCGUAUUGGUGGUGGUGGCUGCUGCCUGCUGCUUCUGCAGAAGAAGAAGAGCGCACCUUGUGGCCGCUGCUCCACUGUUCUCCCAGCGGCAUAGUCCUUUCUGUUUCUUUAUUUGGGCGUAAAUGGUGUUACUGUAACGCUCGCGGCACCUUCAGUUUUCACUUCACCGUAAACGAGGCAAGCAGAGAGUUAUUAUCAUUACUUCCUAGAGUUACUACGGCUCAACGUUCUUCAAAUCCUAAAAUUUUUAAUGGUCAAAGACCUCAAAAUUCUCUUGAAAAGAUGUACUAUAAGAAUUUCAAAUGGUUGUUUUCUUUUUAAAAGGAGAAAAGGUGAAUUGAGCGUAGUUAGUACUUGCAAGGAUUCAUUGCAGGUGCAAAAUGGUGGUAAGAUCAGUGGUAGUAAGUGGUAAGAAUUUUGUGUGCAGAAC

Sequence
(OSA-LNCN7238.4):

CAAGAACAGUGUGAGAGUGCGUGAGUGAGUAGCUGUGAGAGCAACCAAAGAAACAGCAUCAUCGAUCUCACUCCAAGUAAACUCUGACUUACACACAACAGCAACAAUGGAGUAGAGAGAAACAGAGAGAGAUGGCGAUGCAUCAGUGGCUAGUCUGAAUCUGCAAAGGAGGCACAAAGUCUCCAUUAUCUCUUCUGCAGAUUUCAGAAGGCACUGGCGCCAUGGGCGUAUUGGUGGUGGUGGCUGCUGCCUGCUGCUUCUGCAGAAGAAGAAGAGCGCACCUUGUGGCCGCUGCUCCACUGUUCUCCCAGCGGCAUAGUCCUUUCUG

Sequence
(OSA-LNCN7238.5):

AAAAAGUUACUGCUCUACUCUACUACGUACUACUCCUAUACUCCAGCAACAGCAACAAUGGAGUAGAGAGAAACAGAGAGAGAUGGCGAUGCAUCAGUGGCUAGUCUGAAUCUGCAAAGGAGGCACAAAGUCUCCAUUAUCUCUUCUGCAGAUUUCAGAAGGCACUGGCGCCAUGGGCGUAUUGGUGGUGGUGGCUGCUGCCUGCUGCUUCUGCAGAAGAAGAAGAGCGCACCUUGUGGCCGCUGCUCCACUGUUCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

262

LEP:

53.25%

ME_num:

193

MEP:

39.23%

HE_num:

36

HEP:

7.32%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.70

Avg Expression:

3.35

Tip: OSA-LNCN7238 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.044528987437793.16457308646817e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.769558140937260.000345172556384667
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.165428929698040.0385186873094264
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.013265480493060.0404878513257383
5Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"-1.944346062536480.0164965144592022
6Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"-2.809562365817746.55875089027842e-06
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.540155757911970.00193565407225864
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.597169333355460.000272277374252488
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.492338753461210.00314506248908288
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.308614019963235.12994728618765e-10