Chr:
Chr8
Start:
19196809
End:
19201145
Strand:
-
Ref_name:
OSA-LNCN7233
Sequence
(OSA-LNCN7233.1):
UUUGCAUCCCUCUGCUACAGUGUCGCCCCUAACCUCCAGCCGGUCGAUCUCCUCCCUGCCGUGCCCGUGUACAGCGCCGCCUCCCCACCAAAUUCGUCCUCUCCGUUGCUCCUCUUUCCAAAUUAGUUGUGGGAAUAUAUUCCUCUCGAUCUCCUCUAUCUUGUCCCCAAGAAACCCCCUUAAAUUCCAUGGUAUAUCGCGUGGAUUCGACGCGGUUUUGAGUUCCUAUUUUCCGGCGAACCCUAACUAAUCCGUCGCCGAUUCCAUCCGUUCCCAAGCCGAUCUCUCCCUCUUCCGGCUAUAAAUAGCAUCCCCUAACCGUCCUCUUCCAUUUGCCUCUAGUCCCAAGUUGAGCCGUCGCCCGUAGCGCCGCCGCCACGUUGUCUUAGCCGCCGCCGUCGCUGGCGAUCCUCCGGUCGCAUCGCGCCGCCGCUAGCGCCGUCGCCGUUGCCGUCCGUCGCCGCCUUCGGGUGCGCACGGAGAAGGAGUACCUCGUCCGCCCCUUCGCAGCCGCCGAAGACCGCCGGAGCGCCGUCGUCGUUGUUGAGCCGAACCGUGCCGCCGUUGAACCUCGUCGCCGGUCGUCGUUCGUCGUCGUUCGUCGUAGUUUCUUGCACCGUUUCCGACGUUCCGGAGGAGAGCGUUUUCGUUGAGGAAGGUUCGGAAGUGUUUGCGGAAGAUCAAGUUGAAGAAAAAUGAUCUAGAAGGAGAAGACAUUUGGCUUAUACCCCAGUUGAGUUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGUUGUUUUUCUUUUCUUCUGUAAUUAUGUAACGUUAUUAUUAUGAUGGAUUCGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUAAUUUCUGGACGAGGGUUUUAUGCACAAAUAAGUUCGGGAAUUACUAGUGAAUUUCCGGGCGUGACAUAACCUCCUCCUACUAAAUAAGUACAUCUUCUGUCCCAAAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.62%
ME_num:
MEP:
10.77%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.88
Avg Expression:
1.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.65907318225915 | 0.0245129454706644 |