RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7232

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

19156130

End:

19166677

Strand:

+

Ref_name:

OSA-LNCN7232

Sequence
(OSA-LNCN7232.1):

UCUCUCUAUUGCUCUCUCUAUUGUGGACUCUAUUAUUUCAGCUUCAUGUGGACAUCAUAAUGCUUUCAAAUGUGAGGUUGUUGAAUUAUUGUUGUCGAAUUAUUAUGCUACGAAAUGUUGAAUUGCGUUGAAGUCCAUAAUAUAGAAAAAGCUUCUCUGUUCUGCUACACAAUUAGCGGUAAUCGCGCGAUAUUCGUGGUUACCACGCGAAACUGCACAGUAACCACGCUGAAACCAUCGAUUUUUUAAUUCAAAUAUUUGAGAACGAAUUUCACGUGGUUUCCGACGGUUACCACGCGGUUCUGUCUUACCGCGGGGGAGUGAAGUUAUCAUCCAAUGGUUACCGCGUGGUUUACGGUAAGGGAAACCCUAGCUAUCAUCCAAUGUCUUUGUAAAGUUUGUGUUUUCAGGUCUAACAUGCUCUCAUCCAAUGUCUUUGUAAAGUUUUCUUUGAAAGGAUCUGAUGUCGCGAGGUGAAUGUGCGUUCCUGAAAACAGAGAAAGCCUUUCCAAGAAACAGAACAAAACGUUCAGAUCCAAGUAUCAUAUACUUUGUGUUCCUGGAAACACUAGCAAUGGAUUUUAAAUCCUCGUAACUACCCAAGACUCCGAUCAGAAUACAAGAGAUGGGCAAAGCCACAAGGGACAAAACGUUUGGAUCCAAGGAUCACUAGAAACCUCUCUCUUUGAAAGGAAAGUUCUCUACAAAAAGCCUGCGCCUGUCACGCCCAGAUUCUGGACACAUUGUGUGAUAUUACUCUGAAGAAUGGAGAGGAGCUCCGUGAAGAAGACUAUCAUACCAUGCUUGAUUUCAUGUUGAGCCGACUCCAGUCCGACGUCAAUCCCCAGGCGCUGAAGGAGCUGCUGAACAGACUCCAAAACAGUCAGGCACAAUCUCAAACUUCUAGGGCGGCAAGGAGAUUCCUCGACGAGGAUUAGUGAGGCUAUAGUACUGACUAUGCAUAGACGCGCGGCCUUGCCGCGCCCAAUUUAGAUUAGGGUAAUCUGCUUUAUCAAAUAGCCUUGUUUAUGAUCAGUAGUUUUUUUAUUUCUUAACACGUUGAAGCAGAAACCUAAAGAAAUAAAUUAAUAGGGGUUGGGACUUGAGAUCAGAAGAGGAAAAUAAAAUGUUCAUGCACACG

Sequence
(OSA-LNCN7232.2):

AAUUUCUACAUGAAUUUAAAUGUUUUUUCAAUUUUUUCUAACAGCUUCUCUGUUCUGCUACACAAUUAGCGGUAAUCGCGCGAUAUUCGUGGUUACCACGCGAAACUGCACAGUAACCACGCUGAAACCAUCGAUUUUUUAAUUCAAAUAUUUGAGAACGAAUUUCACGUGGUUUCCGACGGUUACCACGCGGUUCUGUCUUACCGCGGGGGAGUGAAGUUAUCAUCCAAUGGUUACCGCGUGGUUUACGUUUUCUUUGAAAGGAUCUGAUGUCGCGAGGUGAAUGUGCGUUCCUGAAAACAGAGAAAGCCUUUCCAAGAAACAGAACAAAACGUUCAGAUCCAAGUAUCAUAUACUUUGUGUUCCUGGAAACACUAGCAAUGGAUUUUAAAUCCUCGUAACUACCCAAGACUCCGAUCAGAAUACAAGAGAUGGGCAAAGCCACAAGGGACAAAACGUUUGGAUCCAAGGAUCACUAGAAACCUCUCUCUUUGAAAGGAAAGUUCUCUACAAAAAGCCUGCGCCUGUCACGCCCAGAUUCUGGACACAUUGUGUGAUAUUACUCUGAAGAAUGGAGAGGAGCUCCGUGAAGAAGACUAUCAUACCAUGCUUGAUUUCAUGUUGAGCCGACUCCAGUCCGACGUCAAUCCCCAGGCGCUGAAGGAGCUGCUGAACAGACUCCAAAACAGUCAGGCACAAUCUCAAACUUCUAGGGCGGCAAGGAGAUUCCUCGACGAGGAUUAGUGAGGCUAUAGUACUGACUAUGCAUAGACGCGCGGCCUUGCCGCGCCCAAUUUAGAUUAGGGUAAUCUGCUUUAUCAAAUAGCCUUGUUUAUGAUCAGUAGUUUUUUUAUUUCUUAACACGUUGAAGCAGAAACCUAAAGAAAUAAAUUAAUAGGGGUUGGGACUUGAGAUCAGAAGAGGAAAAUAAAAUGUUCAUGCACACG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

169

LEP:

34.35%

ME_num:

319

MEP:

64.84%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.91

Avg Expression:

11.95

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.26861989261420.032150750157882
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.448645187174110.0321776382178198
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.28209578745650.0195311847558433
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.614003260185430.0024207774131923