Chr:
Chr8
Start:
18652261
End:
18654964
Strand:
+
Ref_name:
OSA-LNCN7210
Sequence
(OSA-LNCN7210.1):
CACGGGCUCACCGCGCCUCCUCCGCAUCGGCCUCUCUCGAGCAGCACCUCGCGCGCCCCUCUCCCGCAACCGCCGGACACCCUCAUUGGCUCCACAAAUCACACUGCCAUCGCGGCGUCGCCGUCCCGCUGCUCGCACCCCUCCGCCCAUCGCGCCGAACCGCGCCGGAGUCGCCCUCCCCAGCCCUCAGCGCAUCUCACCGAUCCACGCCGCCAGGCCAGAGUCGCCGUCUCCGCCCCUGAUCUACGCCUGGGCGCUCGCCUCCGCGCCCCCAGAUCAUCUUCGGUCGGAGUCGCCGGGCUUGUCGCCAAGCCAAUCCCCUCCGCCACCGAUAGGAGUAACGCUUCUUCAAGCAGAACUUCUAGGGGAGGCUCUUAGAUCUACCGUAUGUUCCUACUGCAAAUGGGGGAGCAAAGAGAUGAAGCACCGGCAAAGCUAGCUUUGAUUUAUUAUUGUUUAUUGAGCCGCUUUGUGAAGUAGCUCCUUGCGUUCUAAUUGUGCUUAUGCCCUUCACAAAUUCCAUGAUAAGGAAAAUCUCAGUUUCAUGUAAUUUGGCACAUGUGCGUGGAUAUAGCUAAAACUGAUGAUUUAGAUGACAAAUCAAGAUGUAUUAUGGUAAACCUUUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.27%
ME_num:
MEP:
44.92%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.72
Avg Expression:
1.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.36122265908434 | 0.0126357273573822 |