Chr:
Chr8
Start:
18019903
End:
18024292
Strand:
+
Ref_name:
OSA-LNCN7187
Sequence
(OSA-LNCN7187.1):
CCCGGGAAGCCCGUCGUCACCGUGAAGCCGAUCUGUUCCAUCUUCAGCCGCGCCGUUCGUCGCCGUCCAUCGCCGCCUUCGUUCACCGUCGCCACCCUCGGGAUCGCAGGAGCGAGGUGAAGACCGUCCGCCCCUCGGUUGCUGCCUCUCAUCGCCGGAAAGCCGUCGCCAACGUCAACCCAAGGUCGCCGCCUUUGGAGCUUGUCGCCUGCCAUCUCCCUCGCCGUCUGUCGUCGCGUAAGUGGUGGUUUAGACUUCCCGUUGUUUCGGAGGAUCGUCCGUUCGUUGGAGAAGUUCCUGAAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
36.99%
HE_num:
HEP:
60.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.79
Avg Expression:
36.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.89753564776455 | 0.00517588491704942 |
2 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 4.22061403103302 | 0.00268942719299776 |