RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7186

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

17855633

End:

17858640

Strand:

-

Ref_name:

OSA-LNCN7186

Sequence
(OSA-LNCN7186.1):

CAUCUUCAAGCUUGGACAGAAGCCCGAGCUGCCGUCCUGUACCUGUGCAGCCGCCGCUUCCUCCACCAAAUCCGGCCUUUUCUCUUGUGUUUUCCUAAAAUUAGUUGAGGGGAAAUCAUCUCCACCUUAUCCUCUCCCUUUCCUUUAAAGUCUCGGAGAUUAAUUUUGCCCGGAUAAACCAAAUCGAAUUCGUUUUCGAGUUUAUCUCUCCAACUAACCCUCGGAUUUUCCGGCUCAAAUCCUCUCGUUUGGAGUCCGAUCUCUCUAAUCCAAGCCUAUAAAUAGCAUCCCUUUGGCGUCCUCUUUCGUUUGCCCCAACUCCCGAGCCUUCUCGUCCCCCGUAGCGCCGCCGCCACGCCGUCCAAGCCGCCGCCGCCGCCGCCGCCGGCCGACGUCCAGCCGCGCCGCGCCGUCGCGUUAUCAGUCGCCGCCGCUUCCUGUCGCCGCCGUUAGAUGCGCACGGAGGCGGGGAACCUCGGCCGCCCCCUCGCCGCCGUUGCCGGUCACCGGAGAGCCGCCGCCGCCGACGACCCGAGCCGUGCCGCCGCUAGAGCUCGCCGCCGGCCACCAUUCGUCGUCGUCCAUCGCGUUUGCUAGUACCGUUUCCGACGUUCCGGAGGAGAGCGUUUUCGUUGAGAAAGGUUCGGAAGCCUUUGCAGAAGCUCAAGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACUGUUAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUAGACGAGGAUUUUAUGCACAAAUUAGUUCGGAAAUUACUAGUGAAUUUCCGGGCGUGACAGCCAGCUUGCAGAGCCACGUGGCUGGAGGGAAGGUAACUCCCCUCUACUUCACAUACCCCCGGACCCAUAUCUCCGACAGUUAAUUUCCUGGGGAGGGUAUUCCUUCGUAUUUAGCCCCGGUUGUAUGAUCAUGACGGGCUGUCGAAAGAAACUCGGCAGUCAGGGGUGGCUUCUCGAAGUACCAAGAGGGCAUCGGAUAGAGGGUAUUAGCUAGUAUAUCAGUUAACUAGAAUGUAUGUAUACUAUACUAUGUAUACUAUUAAGUAUAGGAAUAGAUUUCCUUUCUCUUUUCUUUCCACCUAGCUUAGAUUAUUUAUUAUGAGAAUGAGUUGUUAAUGCUUGUGUGUCACUCUACCCUUGGAUUAUCUUAACCCCUGCUUAGAAUAUGAUUAUCACAAGUAAUAUAUAAAUUAUUAGUCAAU

Sequence
(OSA-LNCN7186.2):

GCCCCAACUCCCGAGCCUUCUCGUCCCCCGUAGCGCCGCCGCCACGCCGUCCAAGCCGCCGCCGCCGCCGCCGCCGGCCGACGUCCAGCCGCGCCGCGCCGUCGCGUUAUCAGUCGCCGCCGCUUCCUGUCGCCGCCGUUAGAUGCGCACGGAGGCGGGGAACCUCGGCCGCCCCCUCGCCGCCGUUGCCGGUCACCGGAGAGCCGCCGCCGCCGACGACCCGAGCCGUGCCGCCGCUAGAGCUCGCCGCCGGCCACCAUUCGUCGUCGUCCAUCGCGUUUGCUAGUACCGUUGAAGAAAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACUGUUAUUCCGCUGCUGUUUUUCUUUUCUUUUGUAAGUAUGUAACGUUAUUAUUAUGAUGGAUUUGUAUAUUAAAUUGUCAGUUUGUGUACCUCGGCUGAUUCCUAGACGAGGAUUUUAUGCACAAAUUAGUUCGGAAAUUACUAGUGAAUUUCCGGGCGUGACAGCCAGCUUGCAGAGCCACGUGGCUGGAGGGAAGGUAACUCCCCUCUACUUCACAUACCCCCGGACCCAUAUCUCCGACAGUUAAUUUCCUGGGGAGGGUAUUCCUUCGUAUUUAGCCCCGGUUGUAUGAUCAUGACGGGCUGUCGAAAGAAACUCGGCAGUCAGGGGUGGCUUCUCGAAGUACCAAGAGGGCAUCGGAUAGAGGGUAUUAGCUAGUAUAUCAGUUAACUAGAAUGUAUGUAUACUAUACUAUGUAUACUAUUAAGUAUAGGAAUAGAUUUCCUUUCUCUUUUCUUUCCACCUAGCUUAGAUUAUUUAUUAUGAGAAUGAGUUGUUAAUGCUUGUGUGUCACUCUACCCUUGGAUUAUCUUAACCCCUGCUUAGAAUAUGAUUAUCACAAGUAAUAUAUAAAUUAUUAGUCAAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

115

LEP:

23.37%

ME_num:

149

MEP:

30.28%

HE_num:

227

HEP:

46.14%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.94

Avg Expression:

116.51

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-3.867545113895989.16604862360228e-10
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.701636627702361.38424005179949e-10
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-3.730177811475578.88091264346601e-11
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-3.501578955245912.20235157173573e-06
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-3.102148005051254.68917813674166e-07
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-3.399054205525667.04938982406275e-08
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA-1.494630631822210.00198977557498457
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-2.520881669133244.20897563715535e-07
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-5.968350585669723.83217427625885e-10
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-3.024097349851614.89694513929882e-08
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.172447955730586.02695766799536e-11
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-3.028775285136991.22692176965007e-09
13Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.817339289964891.99996044075491e-09
14Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-5.271930026501071.27807877245832e-13