RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7184

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

17949570

End:

18013830

Strand:

-

Ref_name:

OSA-LNCN7184

Sequence
(OSA-LNCN7184.1):

CCUUGGCACUGUUCAUCUUCUACCUCUAGCAGCCGAACUGAGACCGAGUGGGCUCGGUUUUUCCCCUCCAAAUCCGACCUUUUCUCUUGUGUUUUCCUAAAAUUAGUUGAGGGGAAAUAUUUACUUUAUCUUCCUCUUUCGUUUCCCCCAAGAAUCGGAACCUAAUUCCUUGUAUUUUAUCCAAAUAAAAUUCGUUUUGAGUUUAUCUCUCCAAACUAACCCGAAGAUUUUCCGGCUUCGAUUCCUCUCGUUUGGAGUCCGAUCUCUCUAGUCCAAGCCUAUAUAAAGCAUCCCCUAGUUCUUCUCUUUCUUUUGCCCCAUCUCCCGAGCUCUCUCGUCAACCGUAGAGCCGCCGCCACGUCGUCUUAGCCGCCGCCGUCGCCGGCCGACGAACAGCCGCCUCGCGCCGUCGUUUUGGCCGUCGCCGCUGCCUCCUCUCGCCGCCGUCGGGUGCGCGUGGAAGAGGGGAAGCUCGGCCGCCCCCUCCCCGCCGUCGCCGGUCACCGGAGAGUCGCCGCCGCCGACGACCGAGUCGCCACCGCCGCACAAGCUCGCCGCCGGCCGUCAUCCGUCGUCGUUCGUCGCGUUGUUUCCGACGUUCCGGAGGAGAGUGUUUCCGUUGAGGAAGGUUCCGAAGCGUUUGCGGAAGCCCAAGGCAAGUCACACAGAUCCCAAACAACCCUUUGAGCAUGUUGAACCCAUUUAAAGCUAUUAUUUUAUUUCAACUAUGCAUUGUUUUCGAAUGUCAUCGGGUGGUGAA

Sequence
(OSA-LNCN7184.2):

CGCCGUCUCCCGCUCCGAAUCAGCACCCAAUCCGGCCCUUUUUCUUCCGAUUGUUUGAGGGGUUUUUAUCCCCACAUCCUCCUCUAUCUUUCACCUCAAGAAUCGGAGCAAAUCAUUGGGUAUUUUAUCCGAAUCGAAUUUGUUUUCGAGUUUAUCUCCAAAACCGAGUUUAGAUUUUUCCCGAAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCAUCUCCCGAGUUCUCUCGUGCUCCGUAGCGCCGCCGCCACGCCGAGCAAGCCGCCGCCGUCGCCGGCCGACGCCCAGCCGCGCCGCGCCGUCGAUUCCGCCGUCGCCGCCGCUUCCCCUCGCCGCCGUUAGGUGCGCACGGAGGUGAGGAACCUCGGCCGCCCUCUCCCCGCUGUCGCCGGUCGCCGGAGACCCGUCGCCGCCGUCGACCGAACCGCCGCCGCCGCACAAGCUCGUCGUCGGCCGCCGUCCCUCGUCGUUGGACGCUUUGUUUCCGACGUUCCGGAGGAGAGUGUUUCCGUUGAGGAAGGUUCCGAAGCGUUUGCGGAAGCCCAAG

Sequence
(OSA-LNCN7184.3):

CCUUGGCACUGUUCAUCUUCUACCUCUAGCAGCCGAACUGAGACCGAGUGGGCUCGGUUUUUCCCCUCCAAAUCCGACCUUUUCUCUUGUGUUUUCCUAAAAUUAGUUGAGGGGAAAUAUUUACUUUAUCUUCCUCUUUCGUUUCCCCCAAGAAUCGGAACCUAAUUCCUUGUAUUUUAUCCAAAUAAAAUUCGUUUUGAGUUUAUCUCUCCAAACUAACCCGAAGAUUUUCCGGCUUCGAUUCCUCUCGUUUGGAGUCCGAUCUCUCUAGUCCAAGCCUAUAUAAAGCAUCCCCUAGUUCUUCUCUUUCUUUUGCCCCAUCUCCCGAGCUCUCUCGUCAACCGUAGAGCCGCCGCCACGUCGUCUUAGCCGCCGCCGUCGCCGGCCGACGAACAGCCGCCUCGCGCCGUCGUUUUGGCCGUCGCCGCUGCCUCCUCUCGCCGCCGUCGGGUGCGCGUGGAAGAGGGGAAGCUCGGCCGCCCCCUCCCCGCCGUCGCCGGUCACCGGAGAGUCGCCGCCGCCGACGACCGAGUCGCCACCGCCGCACAAGCUCGCCGCCGGCCGUCAUCCGUCGUCGUUCGUCGCGUUGUUUUCGACGUUCUGAAGGAGAGCGUUUCCGUUGAGGAAGGUACGAAGCGUUUGCGGAAGCCCAAGUUGAAGAUGAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAAUCCGCUGCUGUUUUCUUUUCUUUUUCGGAAAUUACUAGUGAAUUUUCGGGCGUGACAAGUGUGCAAUCUCCCCACGGAAGCAUUCAAGUCUCCAACAUCGGUGCGCAAGCCACGAACAUCCUCAUGCAAAGCUUCAUGCCCGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

312

LEP:

63.41%

ME_num:

167

MEP:

33.94%

HE_num:

12

HEP:

2.44%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.87

Avg Expression:

3.14

Tip: OSA-LNCN7184 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-2.521979229007480.0267491873821192