RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7164

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

17092456

End:

17092944

Strand:

.

Ref_name:

OSA-LNCN7164

Sequence
(OSA-LNCN7164.1):

GUUGCAACUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUUACACCCUCACCCCCUUAAGAGAGAUUGACGCCCCCGUCGAUCAACCCUAGGCCAGUAACGUCCUCUCUUGGCCACGUCCAUGUGUCCAGUGCCAGCGCAUGUGCCAUGCUGUGUAACCACUCCUGGUCUACACCAGCCAUGCGCACCAUGCCUGCGCAACUGCGACACACGCGCCCGUGAAACCGCGAGAGUCGGCUCUGAUACCAUUUUGUAACGUCCCGCCUUCCCCCAGGCCGGGCCCGCUUACAUCUGAUAGCUUUCAUAGGUCAUAGACUGCCCUCACAGACCAACACAUGUCUUUUCUGCACACUUUGUCCUCACUCGUGUGCACCCGAGAAGAAUUUCCCGGUCGGUCACCCAUCCCAAAUUGCUCCAGGCCAAGCACGUUUAACCCUGGAGUUCUUUGGAGAUUGGCUUCCGGAAAAGAAGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

414

LEP:

84.15%

ME_num:

66

MEP:

13.41%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.85

Avg Expression:

1.92

Tip: OSA-LNCN7164 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-2.454977573217550.00574402100931113
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.901546356584080.0149809749823285