Chr:
Chr8
Start:
16918467
End:
16941746
Strand:
-
Ref_name:
OSA-LNCN7157
Sequence
(OSA-LNCN7157.1):
GACGCCGAACAAAUUAUCAAUCUACUAUUUUUCUCGUUUUUUACUUUUCGGUUCUUUUCUAUUUCGUUUUCAUGGUUAAGUUCUAGCAACCCUAGGAUUUAGUUAAUCUUUGCCGUUUGCGCUGAAAGGCGGUCGUGCUUCUCCACGAAAGCGAGAAGAUUAUCCUUUGCUAGUUUGCUCGGAAACUAGUCGUUCGUCGUCACGUAAACGCUGCAGCUUCGGAAGAUCCGCUCUUCGUGGAAGUUGAAGCCGGUGGUUGGGAAAGCGAGCAAGUAAGAGAAGCUUUGGAGAAGAUGUCUUAGGUGGAGUCCUGGCUUAUACCCCAGUUGAGCGCCUGUGAAGAUGGAGCCGUAGGCCCGCUAGUCCGCUGCUGUUUAUUUUUGAUUGUCAGGCCUGAAGCGCCUUUGUAAUAAUGUAAAUAUUGUCGAUAUAGCAAAGAUGUGUCUUUUAUAUCAUGUUUGUGUGGUGUACCCCGGCUUUUCCUGGGACGGGGAUUAAUACACUAGCGUUCGGGAAAAGGCAAUUUUCCCGGUCGCGACACCCUCACUCCCGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.5%
ME_num:
MEP:
40.85%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.79
Avg Expression:
2.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.32136520120941 | 0.0464007496022092 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.38670866197109 | 0.0281848029428678 |