Chr:
Chr8
Start:
16510494
End:
16511693
Strand:
-
Ref_name:
OSA-LNCN7146
Sequence
(OSA-LNCN7146.1):
GCCUGUAUUGAUUCUUUUUUUUCUUUUGCCGGGAUGACCGAAGGAGGUCAUCCAAAUGUUAUUAAGAUAGAGGGAAAAAAAGGUUACAAGAAAGUUUUUCGCUGUCGAGGAAAGAUGUGCACCAAAACACACGCCCCGACACCACAUGCCAACCGCACCAACACAAGCUACAGAGAGGAGAGCCGAACACCGAACCGGCCGCUGCUAUGCGAGGCCGGUCGCCACCGGGCUUGCAACAACACCACAGAGCAGAAAUUCCAAAAACAACGCCUUCAUGAAGGUUGCGACGCCAAAAGACGCUGUCGAUGAAAAACUUUCUUUGCGACGCCAAAAGACGUUGUCGAUGAAAAACUUUCUUGGGAUCUGUCAUUUUGAAAUCUACUCUGGAUUCACCUGAAGCUUCUGUAGAUGGAAUUGGAUUCAAAACAAUUGACUUCUGCAACAUUCAGUUUUCUGCCCUGCCAUCUGGUAAAAAUUUAUCUUCUGGUCCAGGUUCUGGUCCUGUUGAGAUUGUAAUUAAUUAUGCUCAUAUAAGAAGGAUAUACCAUUGCCAGCAGUCAGUUAUGUCCAGAUCCAGAUCAGAUCCUAAAAAGAGAUGGUUUGUGUUAUUGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.05%
ME_num:
MEP:
20.73%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
1.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.36838834103783 | 0.0465989426556195 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.6263671780663 | 0.000416583505737281 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.58283058430066 | 0.00467004943293921 |
4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.45998396300414 | 6.25019964324625e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.33494805266013 | 0.04327612990106 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.24123492672548 | 0.0237993253381441 |