Chr:
Chr8
Start:
16235940
End:
16244560
Strand:
-
Ref_name:
OSA-LNCN7142
Sequence
(OSA-LNCN7142.1):
UAUGCUGAUGGAGCCACUUCCUGAGAGGCGGGAAUGUGGACGUCCUCAGAAAACCAUAACGACUCAAUGGCGGGAAGCUAUCCUUGGGAUCACAAUGGAUGGUGGACAGAACCGUCAUUGUUUAAUAUGAACACUGGUAUUAAAACUUGAUCAGUCUAUGCUAGGUCUUAGGCUUGUGAAAAGAAUUACAAAACUUGCUUUGCGCAAAAGAACCAUAGCCAUCCUUUGAAUUCCUCUGUCAUGUGCAUCAUUGCUGUGGUGGCUUGCUGAGUACGGUUGGUACUCACCCUUGCAAAUAUAAAAUUAAUCAGAAGCGGGAGAUGAAGCCUCGGAGGAUCCCUAUGCCUACUACCAGGAGGGAGAUGAAGACGAUGGCGCUCAGUAGGUCUUAGUACGGUCGUUGCCUGUGGCAAUGGCAUGCCGCUGCCUGAAUUCCGCUGCCUUAUCUAUUUCUGCUUUUGGAUGUAUUCCGGACCGCUCGGUCCGAUGAUUUAAGACUGUGCCUGCGGGCUUAUGAUGUAAUAAUUCGUACUAGACUCUCGUGUAUGUGCACUUGAUAUUUCAGCUAUGAGUUCGUGUGUACCAGACUACUUGAUCCAGGGAAAUGGUACUGUUUACAUGAUUGAUUCCUGUUAUAAAAACGGGGGUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.62%
ME_num:
MEP:
45.73%
HE_num:
HEP:
15.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.76
Avg Expression:
6.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.92288346887036 | 1.03385872925454e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.08942364219151 | 1.33135281171349e-09 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.4824408686163 | 5.41089834425708e-05 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.29155232976019 | 0.0128352719489878 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.13879765973436 | 0.000589575178459867 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.68236490537557 | 2.29677029336552e-06 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.81428620448268 | 2.33764542609991e-06 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.9568693403135 | 3.00060430404883e-11 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.05660719905622 | 0.0477728312002573 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.21301595354146 | 0.00120867251963057 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.29840124001012 | 6.3389451468606e-13 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.2984905450341 | 6.83819153931068e-13 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.29855277414694 | 6.41454314350442e-13 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.77041905166695 | 1.50951633432322e-18 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.28483162558379 | 0.00555921875566529 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.35032631109101 | 2.65346787751834e-84 |