Chr:
Chr8
Start:
16235824
End:
16254859
Strand:
+
Ref_name:
OSA-LNCN7141
Sequence
(OSA-LNCN7141.1):
AAAAAAAGGAGAGAGGAGAGAAAAAAAGGAGAGAAAAAGAAAGAGAGGGAGAGAAAAGAGAGAAAAAGAAAGAGAGGAGAGAAAAAGAGGGAAAAUAGAAAAGAAGAAAAGGAGAAAAUAGAAGGGAAAUUGGGGGAGAAAUUAGGAGGAUUUAGGAAAUAAAAAUGGUCGGGGUUAAUCAUAGAUUAUUUUUGGAAAUUCCUCGAGCGUAAUAGUAUUUCGAUCGAAAUUCCGAGUUAAUUAUAAAAAAUAUGUUUCUUGAUCAGAUUAGAUUAAAAUUGGUAGUAAUUUAGAUAUAAUUAAUAACUAAACAAUUAGAUGAAUUCUUAUAGAUUAUUAUAGAUUAUUUUUGGUAAUCUCUAUAAGUCAUCGGUUCAUGGUAGAAAUUCGGAUUUAAUUACUAGGAAUCUUAGCCGUGUAUUAUAUUUAAUCGUUUAGUCAUAGACUAAAUUAAAUUGUAUAAUAUUUCUAGGAUUUCGUCCGAUAUUUAGCUCGUAAUAGAAAUUUCUAACCUAUUAUAUGGAUAUAAUGCUCGGGAAGAGUAAAUUAAAAACUUAUGACAACAAAAUAUUUAUACCCGCAAAAUAGUUUAAAUCGAAAUUGGGUUUGCCGUAGUUCGCAGAUAGUAAAGUUAAUAAAAAGGAAUCGACUUUCGCAUUCGACUUUCAUUUGGAUUUAUUUGGAUUUUUAUUUGAAUUCUAACCGAAUUCAAAUCAAUUUUCGCACGUAACUAUAGAGCCCGAGGGAGUUGCGGAUCCAAGCGAAGGCCAAGACCCGCAAGACUUUGAGCAAGGCAAGUCAUCACUAUUCCUUGAACAUGUUGAUCCUAAUUGCGAAAUUGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.41%
ME_num:
MEP:
19.31%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
5.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.54390993128025 | 5.81518473744508e-05 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -3.79593126829644 | 1.96288876203808e-06 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.80396046463686 | 0.0304265612471629 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -7.77871468321165 | 1.56566322680828e-05 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -7.77877916627533 | 1.57369508890059e-05 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -7.77881524105635 | 1.56920778582273e-05 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -7.32152702872086 | 4.46942609256892e-08 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.57454805399432 | 1.20553162371546e-43 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -8.96221786200381 | 1.86701230088849e-11 |