RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7139

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

16444157

End:

16445221

Strand:

+

Ref_name:

OSA-LNCN7139

Sequence
(OSA-LNCN7139.1):

CUAGCUCGAUCGUAGCCAUAGAUAAAGCAGAUGCUGUGUACGUUCAGAUCAAUUAGUUGCCAAGGAAGCUGCAGUGGUAUAUACAUGGAGGCAGCAAGGACGACGACGGUGAGGAGGAGAAGCAGAAGCAGGUUCAGCAGAGCUCUCAAGGAGUGCCGAGCCAGGCUCUGCAUCGUCCGCUGGUGCGUCGUCAGGCUUUUCUGUUGCCAUGAUUGAUUGAUGCGAUGAUAUACAUAUGAGCUAUAUGUACUGUGUAUCUUCUCACAAUCUGGACUCUGGACUCUGGCCGCCGUAUAUAUAAAUAUGGUCGAUUGUGGAGCUGGGCAACAACAAAUUUAACUCCCAUCGAUCCAUGGAGCAUUCAGAGGUUAUAUGUGGCGCUAUGCAUGCAUGCAGUAAAAGCUAGGAAUUUCAGUGGCAUAAAGAAAGGCCAGCCUCCUCCUUUUCUAGAGUUUCUUAGAGAAAUUUUCUCCUUUCUCUGUUCCUUCCUUUUAUGUAGACGUUGUUUGCUUUUCAGUUAUAAUUGUCAGCUUAAUUACCAAGCUCGUACAUCACAUCUUGUGUAACUGUAAAUAUCUUUACACUCGGAACACUCGAUCUAGUGCAAGCUGGUGAUCAUUAGGCAUGGUUGUGAGCUCUAGUGUAUCGUCACUCGUAUUGCCUAUAACAUUUGAAAUUAGACCAUGGAGAAGCUCUAUCUAAUGAAAAAUUUGGUGCAAAAUUUAAUACCUCAUAGUACCUAGGUACCAAGAGAUACCAAAUUUACAAUAGAAAAAAUGGUACCUCAUGGUACCUCCUCAAGGACCGUAAAAUUGCUAAAAAAAACAUGUUGGUCUUCAACGGCUAGAGUACUCAUUUUUGCUCAAUCUUUUCCCGCUCCAGUCAGCGAAGCUUUGGAGAAAUCUUAGGUGGAGUUCUCGCUUAUAUCCCAGUUGAGCGCAUGUAAAGAUGGAGCAAUAGGCCAGUUAGUCUCCUGUUAUUUUUUUCUUUCGUUAUCAGGCCUAAUGUAUCUUUGUAACAAUGUAAACAUUAUCGUGAUAUAAUUAAUAAAGAUGUCUCUUUUAA

Sequence
(OSA-LNCN7139.2):

GGAAGCUGCAGUGGUAUAUACAUGGAGGCAGCAAGGACGACGACGGUGAGGAGGAGAAGCAGAAGCAGGUUCAGCAGAGCUCUCAAGGAGUGCCGAGCCAGGCUCUGCAUCGUCCGCUGUCAGCGAAGCUUUGGAGAAAUCUUAGGUGGAGUUCUCGCUUAUAUCCCAGUUGAGCGCAUGUAAAGAUGGAGCAAUAGGCCAGUUAGUCUCCUGUUAUUUUUUUCUUUCGUUAUCAGGCCUAAUGUAUCUUUGUAACAAUGUAAACAUUAUCGUGAUAUAAUUAAUAAAGAUGUCUCUUUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

409

LEP:

83.13%

ME_num:

68

MEP:

13.82%

HE_num:

14

HEP:

2.85%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_elongation_zone

Tau :

0.87

Avg Expression:

2.80

Tip: OSA-LNCN7139 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"-4.549700924664223.24177849756945e-05
2Baldo // root // control--/--Baldo // root // 100 mM NaCl-1.918540682444390.0394080082566892