Chr:
Chr8
Start:
16367123
End:
16367715
Strand:
+
Ref_name:
OSA-LNCN7137
Sequence
(OSA-LNCN7137.1):
CUCAUAUAGAGGAUCUAAAUCAGUACAAAAAUCCUCGCCUCUUGUCUCUUUACUACUAUCUCGUGUAUACCUUGUUACACUGCGAAGAGCCAAGGGACAUUCAACACAUCGCUUUGCUGAACUUUUGAGGGUGGUUAUGAAGAUUUUCAAUUAGCAUGGAGGGAGAUUCAACAAUAAUAUGCUAUGUGUGGCUUAAUCUUUUCUCUCUUUUUUUUUUCAGUUUUGCUUUUGCUCAUUUGUUCUCAUAUAUCUCAUACUCUGCUAUAUGAAGAAACUUUGUACUAAUAUUAUGGUUAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.31%
ME_num:
MEP:
5.08%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
0.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.47597727140242 | 0.00826776650850027 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 4.72302755290974 | 0.0140148412094818 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.48072918626421 | 0.0376608336962771 |