Chr:
Chr8
Start:
15954117
End:
15955278
Strand:
.
Ref_name:
OSA-LNCN7134
Sequence
(OSA-LNCN7134.1):
CACAUCUAUAUAGUUAUUUUUUAACUGUUCGAGACAGGCAAUGUGUGUUGUGAUCCAACGGUGUUUGCACAUUGAGUUUUUUUUAACUCGAUGUACUGACUUUAUUUGGUAUAUAUAUUACGAAUUCCCAUCGUAGAAACCGUCCACCCACACUUUCCUCUCCCUCUCCACAUUUUACGGAUCAGCGACGGCAUGUGGUUCCCCGUGGAGAACAGAGGAACGGCGACGGCUGUUCCGGUGACGUCUUGGCAUCGAGGAGGAGCGGCGGCAGCGGCGGUUCAGGGACGAGGAGAACCGGCGUCGAGGAGGAGAGGUGGUGGUGGUUCGGGGAUGAUGAGGAGUGACGAGGUGGAUCCGGCACGGCAUCGGCUGCGGGCACAGUGGUGACAGGCGACUGCGGGUGCGGCGUUGGUGGGUGGGAGGUGCGACGGCUCCACCACUACUGCCGAGCGGCGGCGGGCGCGAUGUCGGCGGAUCCGGCUCGGCACGGUUGUGGGCGCGGCAACGACGGGAGAAUGCGGGCUGGAGGCGCGGCGGCUCCACCUCCAUCGCUGAUCGGCGGCAGGUACGACGUCGGCGGAUCUGGCAUGGCACGGCUGCGGGCGCGACGGCAACGGGCGACUACUGAUAGGAGGUGAGGAGGCGGCGCAUCCGGCCGCCACUCCGCGCCCCACGCAUGCGGAUCUGGCGUGGAUCUUGCACGGGUGACGGCGGGUGCGGCUGUGACGGGCAAGUACGGGCAGUAGGCAAGGCGGCGGCGGAUCCGACUACUGUUCCGCCCCUACGCGCACGGCGCGGCCUCCGCGGCGGCGUCCACCUCCACAACGCGCCGGCAUCGAUGUCCGGAGCAAGCGCUAACAAAAAUUUAACUUAUGCUAUAGAUUGUGAGGAUGUAUAUGUUCUGUCAAAAUUUUGUUGUCGUACCAAGUUAAUUUUUUACUCAGUAAGGAUACCAAGCAUAUGAUUUAUAUGAAAAGGGUUUCUAAUGAAAACAUAGCGCCAGUUUUAUUAAGAGUAAUUAUCGCACGAAAAAGCCCCUUUUUUGGGCACCUCAUCUAGCUGUUUUUUCAUUUAACGGCGAAUCGAUACUCCCUAAGAUCACGCAUAUUUUUUUAAGAACUAAAAGUUAUUCUUUAAUUACGUAUUUCAGCUUUCAUAUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.78%
ME_num:
MEP:
14.02%
HE_num:
HEP:
11.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
6.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -5.2953513690983 | 0.00148478767610161 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.88853755648136 | 0.000204994958067154 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -3.40124457993503 | 0.0324695004276006 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.63075839253411 | 0.0145069249269056 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -5.17832940371953 | 3.24783108483544e-09 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -5.1784521238558 | 3.3664401915475e-09 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -5.17849710079727 | 3.26759557042239e-09 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.26134112486098 | 2.61386432318683e-12 |
| 9 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.00537796716002 | 0.0070009529659037 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.25690601334681 | 2.46961514153302e-17 |