RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7119

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

15103271

End:

15104412

Strand:

-

Ref_name:

OSA-LNCN7119

Sequence
(OSA-LNCN7119.1):

CUCCACUACCUCCCUCACGACAACAAUGGACCUCUCUAAUAACACCCCAUCUGGCAAUUUUCCACAGCUUUCCUGGCAAGUGACCACCAUAUGCACAACAGGACUUUGUGGAACAAGAUAUUGGUGAUGAUACAACUAUACAACUGGCACGAUCAGGGCAGCAGGGCACACACGGUGGUGAAAACAGGGCCAAGGUUGUCAAUUUUGGACACAGCUACAAAAUGAUUCAGCAUGGUUUGAACAAAUAACUAAAUAAGGUGCUUUUUAUUACAUUAAGGGAGAAAAUAAUCAAAUGAAUUUUGAGGAAAGAUAGUGAGAAAGGAGAACUACAAAUUUCUUGACCAGGGGAUAUGACAAAUUGACAAUAAAUCUCCACAGGGCAAAGAAAGUUUGUACAUUGGAGCAUUCUCAUUGCUAGGAUGAAAAGGACAGUGGCAUAGAUGAAAAAUGUUGAUUGACAUGGCAAAACAACAGAUGGCAUGGGCUUAUUACCUAGGAAGGCACAUCCAAAACCUCGGUGCUAGAUGGAUGACAACAUGACCUUGGUGUCUAUGAGACAGGCAUGCAAUUAUCCAAAAUAAUGAGCGAGCAUUGAUGCAACAGAGGGUCUGCAUCUCAGAGUAGUGGCUACAGAUGGCCACAGGGAGCCAUCAUUCACAAAAGACAGCAGUACACUGGGCCAUGAUGUUUACAUUGAAGGGGGAUCUCAAACAAAUAUUAGAUUCAUGCAGGGAGAUAUUGAAAUUUGAAACAUAAAUGGCAGGGCUCUGAGCUAUGUGGUUUCAGUAACAAUAUGAGGUUCUUCUACAUAUAUAUUUUUAGUGCAUGUUGCCAGGUUUUUAUGGGGUCAAUUCAUAUCACCUUUCCUUUAAUCUCCUUUGCAAAAUGCAGUCAACAUGUUUCACAAUUGGCUAGCAAAUCUAAACCCAAGUCAAAUAUGACAAGUUGGUCCAGGCUUUUGUCAAAAUGAUGUUGUCCCAUCCCUAGUUUAUGUAUAUUCAUUAUGAUGUAUAUAAAUGAUCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

236

LEP:

47.97%

ME_num:

239

MEP:

48.58%

HE_num:

16

HEP:

3.25%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.81

Avg Expression:

3.94

Tip: OSA-LNCN7119 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-3.389092019162035.82773085041848e-22
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-3.196230276376691.06552299555727e-22
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-3.505120958161922.12224787571265e-24
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-3.105222915352272.34571217435526e-12
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-3.625156671228133.2386325020366e-17
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-4.050247793698863.70378368334723e-20
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-3.030002366189319.48269098949747e-24
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.067447126037341.00899914114437e-26
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-3.520296139440294.61141225465375e-28
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-3.634816429176583.36493945690393e-21
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-3.217924106570532.26864912599083e-26