Chr:
Chr8
Start:
14999603
End:
15002737
Strand:
-
Ref_name:
OSA-LNCN7114
Sequence
(OSA-LNCN7114.1):
CGCCGUAGCCAUGCCGACUCCGGCCGCCACCGCGCCAUGGUUGAGCUCGCCGUGGAGAGACCUCGUUCCAAUGCAGCAUAGGCUAGAUUCCGAGGGAAUUGUUGAGUCGAUUGAGGAGCAGGGACAGCAAGACUGCGAUCAAGUGGAUGGCAAUGAAGUCGAGGAGGAUCCCUAUGCUUAACUUCAGGAGGAUGCGGAGGACGACGGCGCUCCGUAGGUCUUAGUUACGGUCGUUGCCGGUGGCAAUGGUGUCGCCGCUGCCUUGAUUCCGUUGCUUAUCUAUCUCUGCUUUUGGGAUGUAUUCCGGACCGUUUGGUCCUAUGUUCUAAGACUGCCUACGGGCCUAUGAUGUAAUAAUUCGCGCUAGACAAUCUUUGUAUGCACACUUGAUAUUUCAGCAAUGUAAUCGUGAGUACUAGACUACUUGAUCCAGGGAAAUGGUACUAUUAACACGAGUGAUUCCUAUUAUAAAAACGGGGGUCUACAGUUUCACUUCUUCCUUUUUCGGCCCUAUAUGCCCAUUCCAUAGUUGUCCAAUGUCCCACCAUGAUAUGUUCUCUAAAGACCAUAUUGCCGCUGGUUCAUAACACUGAGUGCAAAACUACCUACUCCAAACCAAAAUGUAUGUUUGAAAAAAAUUGAAAUUAUGAAAAACUAAAAUAUUUUAACAAUGAAAAUAGAAAAUAAAUUUGUACUAUUGAGAAAAUUUAAAUCAAAUUUGAAUUAAUCCAAAUUGAGUACAAACAACAGAUUAUGCAAACCAAAAGAUUUGGUAUUGAAACUUUUAAAAAAUAAUUGCUUUUCAACAACAUCG
Sequence
(OSA-LNCN7114.2):
ACCGCCGUCUGCCCCUGUUUCGACCGCACCGUGCCACGCGCCGUCGAACUUCGCCGUUCCGUCACUCCGUGUGGAUGGCAAUGAAGUCGAGGAGGAUCCCUAUGCUUAACUUCAGGAGGAUGCGGAGGACGACGGCGCUCCGUAGGUCUUAGUUACGGUCGUUGCCGGUGGCAAUGGUGUCGCCGCUGCCUUGAUUCCGUUGCUUAUCUAUCUCUGCUUUUGGGAUGUAUUCCGGACCGUUUGGUCCUAUGUUCUAAGACUGCCUACGGGCCUAUGAUGUAAUAAUUCGCGCUAGACAAUCUUUGUAUGCACACUUGAUAUUUCAGCAAUGUAAUCGUGAGUACUAGACUACUUGAUCCAGGGAAAUGGUACUAUUAACAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.35%
ME_num:
MEP:
58.54%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.84
Avg Expression:
6.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.97978993195033 | 9.35248903025082e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.19222206858559 | 0.0367624469512997 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.23533616041512 | 0.00123291087056216 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.95374555271449 | 0.0251611624687329 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.07556532526095 | 0.0287310638354949 |
| 6 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 3.901528139797 | 1.97146712643575e-07 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.53439783339931 | 0.0140272419199061 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.8626977881289 | 1.90612290085255e-10 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.85179059373378 | 0.0027920450764201 |
| 10 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.21719506371912 | 0.0432427466468437 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.18210484594125 | 0.00233881309728564 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.94784512395397 | 0.00288501150884398 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.40037597524336 | 0.0017200389631596 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.1140545384508 | 2.23164400518268e-15 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.19864827235875 | 0.0135893222370961 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.88764708158369 | 0.0264507918045003 |
| 17 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.07402678473284 | 1.10667782419914e-05 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.57949312485074 | 0.000656754208076808 |