Chr:
Chr8
Start:
14978370
End:
14979122
Strand:
+
Ref_name:
OSA-LNCN7112
Sequence
(OSA-LNCN7112.1):
CGGCCAUCGAUUCCCCUACACCUCCGGCAAGAUUGGCACAAAAAGAACUGUAGGAGUAGUAGACUUCUUCGGUGGUAGAGAAGAAUCUCAAACACUGUGCUUGUACUAGUAGCACUGCAUUGGAUUGUGGCACUGUACAUACUAGUAGCACUGCAUUGAACUGUCGUUGCUAUGGAUCAGUAGAGUUAUCAGUUAGUACGUAGCACUUCUUUUUAUAGGCUUUGAGUGUUAAAUAUAUACUCCGUGCUGUAUUAUUAUGAAUAUAAUUGUCUAGUUUGUUAUUUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.62%
ME_num:
MEP:
10.77%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.5542961370708 | 0.019541873865366 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.703487846086 | 0.0147458562447461 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.11836709319879 | 0.0306734842292135 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -3.54737387477196 | 0.0237021984044078 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.51714232655581 | 0.016810670167719 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.99505880183593 | 0.00747588717780314 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.4812129865885 | 0.0492015487327687 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.40695323008607 | 0.0301488354659006 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.17838620033022 | 0.0156812193810847 |