Chr:
Chr8
Start:
14745149
End:
14752689
Strand:
-
Ref_name:
OSA-LNCN7111
Sequence
(OSA-LNCN7111.1):
UGCGGGACUAUUCAACAGUAUAUUCAAUUUUCCUGCACCCAUGGAACUUGCUGCAUAUUUCACCCAAGAAUCCACGUGGUCACAUCAAGCCCAAAAUGCAUUUUCAGAUACAAAAUAUAUGUCAGUCCAUAGGGGCAGAACUAUAGAGGAAAAAUAAUUUGUAAAUUUGCAAAGUAGAACGUGAUGCCAUGAAGAUUCCAUCAACCAUGUAAUUAACCUACUUAUAGGAAAUCAACCUACAACAUGUAUACAGAAAAUGAAACAUGUAUCCAGCAGCAUCGCCUUUAGUCCAAAGGCAUUGCGAGGGAUGGUACGAUGUUGCCACUGCACCCUGCUAUGAGAUCACCUUCUCCUGCCUACAACCUGAGACCACCGACCAGUGGAGCAAGAGAGGAUGGAUCUAAAAAAACUAAAUAUUGUUUCCAUUAGCAGACUAAUGAACGAAAGCUUAUAUCUUCGGCGGAAGCGGGGAACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.3%
ME_num:
MEP:
14.43%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
6.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.42518238669047 | 3.89759472686108e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.42208807108516 | 8.36204505009231e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.64043223017787 | 2.48994090239907e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.53185691759048 | 5.03465659801288e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.40479308451215 | 1.23091546117438e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.68512364729743 | 4.12943360309993e-19 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.72186529736906 | 0.00523869237336578 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.37508095997504 | 0.00478905873573919 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.20094802697021 | 9.42840850514498e-14 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 4.92261729280488 | 2.39313216142486e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.44550630139357 | 9.85511059366642e-14 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.58280373682485 | 3.3197129401942e-18 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.5505904382749 | 3.38631149661932e-13 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.82527214548337 | 1.67658487496788e-24 |