Chr:
Chr8
Start:
14663342
End:
14664200
Strand:
-
Ref_name:
OSA-LNCN7104
Sequence
(OSA-LNCN7104.1):
CACAUUUCCACCUAACCAACUUCCAGCCAAAUUAAAGAUGGAUCCGUUACUGGUUGAAUGCAUGGAGGCUAAGGCUACGCCUUUAUAAGUGCUGGAACUGGUAUUGCAUUUGGAGCAUCGAGCACCCACGAAUUCUUCGGCAUAACUCGAUCGCCUCUCCAAACACAGAAAGCACAUACUGCGUGUCAGUAACAAUGGCAAAGAACUACUCGACCUCCGUUCAGCUGCUUGUCGUCCUCCUCGUUAUACUGGUUUCUGUCGGCGGCAUCCUCGGACGAAGUGGACCAAGCACCUGCGCAAACAACCCGGCUUUCCAGCAAUCCUGCCCGCCAAUACCUGGUAGAGGGCACUAAUCGAUCCAUGGACGAUGCAUAGGGGAAGAAUUCGCGUUCGAUCGAUUUAAUUUCUACACAUCGGGAUUUGAAAGCUUAGCAAGUUUAUUAUUAUACACGAAACAACUACUCUAUGUUUUUUAAGGUGCUCGUGUGUUCGUGUUGAUGUUCCCAUGUCCAUGCAGUGUCCUGCUUUACCAAUAUAAUAAAACGGACAGCAUAAUUAUCCGAUGAACUGUAUCCGGUCAGCUAGCUUUUGUGGUUGAGUAUUCAGUGUCUGGUGUCCAAUGCCAAGUUAUCCCGUCCGCGGCCUUAUUAAUGAUGCACUUCCUGUCUUCCUCAAUUUCCUCCUAAAGUGCCACACAUAUAUAUUUUCUUAUUUCUUGGGUUGUUUCCA
Sequence
(OSA-LNCN7104.2):
CACAUUUCCACCUAACCAACUUCCAGCCAAAUUAAAGAUGGAUCCGUUACUGGUUGAAUGCAUGGAGGCUAAGGCUACGCCUUUAUAAGUGCUGGAACUGGUAUUGCAUUUGGAGCAUCGAGCACCCACGAAUUCUUCGGCAUAACUCGAUCGCCUCUCCAAACACAGAAAGCACAUACUGCGUGUCAGUAACAAUGGCAAAGAACUACUCGACCUCCGUUCAGCUGCUUGUCGUCCUCCUCGUUAUACUGGUUUCUGUCGGCGGCAUCCUCGGACGAAGUGGACCAAGCACCUGCGCAAACAACCCAAUCCUGCCCGCCAAUACCUGGUAGAGGGCACUAAUCGAUCCAUGGACGAUGCAUAGGGGAAGAAUUCGCGUUCGAUCGAUUUAAUUUCUACACAUCGGGAUUUGAAAGCUUAGCAAGUUUAUUAUUAUACACGAAACAACUACUCUAUGUUUUUUAAGGUGCUCGUGUGUUCGUGUUGAUGUUCCCAUGUCCAUGCAGUGUCCUGCUUUACCAAUAUAAUAAAACGGACAGCAUAAUUAUCCGAUGAACUGUAUCCGGUCAGCUAGCUUUUGUGGUUGAGUAUUCAGUGUCUGGUGUCCAAUGCCAAGUUAUCCCGUCCGCGGCCUUAUUAAUGAUGCACUUCCUGUCUUCCUCAAUUUCCUCCUAAAGUGCCACACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.64%
ME_num:
MEP:
37.2%
HE_num:
HEP:
34.96%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.91
Avg Expression:
61.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.7912410377999 | 2.70183343547361e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.34864303165057 | 2.49382880871058e-11 |
| 3 | Azucena // root // control--/--Azucena // root // Al | 1.81297738972462 | 0.00595041985112041 |
| 4 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.15985745605598 | 0.000344184311053026 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 6.93458451079539 | 8.3741055744312e-08 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.84289564174819 | 0.0202942902557361 |
| 7 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.61660498690893 | 0.0103499569655492 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.592164576675 | 7.01664599261747e-14 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.80593220341833 | 0.010904712313019 |
| 10 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 5.09338197761402 | 6.24256138480228e-60 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 3.1054929298961 | 3.18869479606478e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.17086224520228 | 1.61175156633134e-05 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.99202322818071 | 1.05932433570522e-10 |
| 14 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.63985552722555 | 0.0218987795286975 |
| 15 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.58754577499843 | 0.00651407661516602 |
| 16 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.05232420125581 | 0.0430858212478724 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.40750094660423 | 4.51971893222422e-09 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.19695780522515 | 0.0249274341960052 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.91683770819645 | 0.00141048997908425 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.66215670371776 | 0.000221961439635669 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.6669438557282 | 3.43536965920047e-09 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.14140208457939 | 0.000868020252974106 |
| 23 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.93617366995861 | 1.18477621488991e-10 |
| 24 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.45753759523846 | 2.06330847784813e-06 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 7.16029972550349 | 4.81892209731058e-08 |
| 26 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.17320746026414 | 0.00931124456478784 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 9.68918154360382 | 1.25275018225712e-15 |