Chr:
Chr8
Start:
14616197
End:
14638932
Strand:
-
Ref_name:
OSA-LNCN7101
Sequence
(OSA-LNCN7101.1):
GUUCCUCUCAAUCAAUAAAGAUCUAAGCAGUGGAAAAAUAAGAUAAACGGCGCAGACGGCUCCACUCCACAGGCAGCUUGACCAGGGCUACACCUAAUCCUCCACACCAUCAGCAUCACUGUAGAACUCUUCCUCUGAUGAAUGAUUGCAAGGUGAGUAUAUGACAUACUCAGCAAGCCACGCAGCAAAUAUGCAAGUGCACAGGAUAACAAAGGAUGGCAUAAUAGGGUUUCAUUUGCAUAAACCGCAUUUAAUAAACAUUUCAGAAUUUAAAAAAACAGUUAAGUAAUAAUUAAACAAUAUUAAUCCAACGCUAUACAACAUACCCUGUUGUAUAGGCCCAACCAUUCUGAACAACCAUCCCGGCUGCACAGUUCUAUCUCCAAACCAGGAAUAUGCCAUUCCAAACCAGGAGCUAAUCAAAUUAUUACCAGUUAUAGCAUCUUUUAUUAUGAUAAGAGGCGUGAGACUAAUCACGAAAGACAUUGUUAGACCCGCCCAUAACCGCGGGCACGGCUAUUCGAAUAGUUUUACUCUGAUCAGAGGUGUACCACUGUACCCACAAGACACAGCCCCACAUCAUGUCACCAUGUGCCUCAAUACCACCACAGUACCUCGGAAAGGAGCUGUGACAAUACCCCUUGCAUAACACAAUCCACCGCAGCGCACCAUUCCUGGAUCAUAAUCACCCCCUUAUAAUAAGGCAUGGACUCCCCAGCGACCCCCGUAGGCUUAUCUCCGCCACUUCUCAGUCUGGUGCCCCACAACACCAAAACAAUAGGUUAAUUCCACCCAAUGACAUUCGAAAAUAAAUGCAAUAGUUGAAUAGAAACAAUAGCUUUAAACGGGAUCAACAUGCUCAAAGGGUUGUUUGGGAUCUGUGUGACUUGCCUUGCUGGCCUUGGAACUCUUCAAAUUCUUCUCCUGCGAAAACGGACUCUCCGGAAACGUCGGAAUCUAAGCAGAAAAGAGCAAAAACACCAAAACAGCACAUAAACAAGCAUGAACAGUACAUGUGGAUAUUUUUAACAUGUAGAUCUCAAUUUUAGAAAAAUUUAGAGACUUGAACCAACUAAAUCCGAGCUAAGAUGAAUUAGUUAUGAAUUUUUAAAGAUUAAAUCGGAUUAAAACACUUAUAUGGAUUUUAAUUGAAUUAUGACGCAAUAAUGAAUUAUUUUUGAAAAGGAAAAAGGAAUUAUUGCGUCAGCGGCUAGGGUUUGCGGUGGACCGGGCGCAUGGCGGCGGUUCACGGAAACGGACGGCCGAGAUCGAUCCAUCCAAAACGGACGGCCGAGAUCCAAAACGGACGGCCGAGAUCGAUCCAUCCAAAACGGACGGCCCCGAUGACGUCAGCGACGACGUCAGCACCAGCGGCGGCUCGGCGGCUCGGGAGCACUUGCUCGCCGGCGAACGACGGCGCGAGGACGCAAACGGAGGGCACCCACGGGUAGCGGACGGCACGGCGAACUCACCGGUGACCAAAAAAACGGCGGAGGAGCAACGGACGGCGACGGCGACGAGGUAGAAGCGGCGGCAACCUUCGGGUCGACGGUGACGGCGGUGCUCCGGCGGUCGAUAGCGAUGGUGAAGGGGCGGACGAGGACGGCGACGCGACGGCGACCACGAUGGCGAUCUUCCCGAGCGACGGCGACGACUGGAACGGCGGCGGCGCACGGCUGGAGCGACGGCGACGACGGCGGCUCGAGGUCUCACGGGGCUAGGGCGCUACCGACGGCGAGAGGCGAAAACAAGAGUGGCGACGGGUAGAGGAGACACCGGGGAUCCUUUUAAAGGGGCUAAGAGGCGGCGGCGAAGGCCCACGGCGACCGGCGACGCGAAGGAAACUUCGGGUUCGGGAGAGAGAGAGGAAUCCGAUUCGACCUCGAAUCCACGAACUUCCAAAGCGAGUUAGACGAUGAUUCCAAAAGAGAAAAGGUAGAGGAGAUCCCGAAGAUUGUUUCCCCUCAAUUGAUUUCACCGGAAACGGAAAGACGCGGCCGAAUUUGGAAAGCGACGGCGGCGGCGCGGCGCUAGGGUUUCGGGCGGCGGCGGCUGGAGGUUGACGACGACCCCGACAGGCGGGACCCACCUGUCAGCGACCGGACGCGCGCGCGCGGCGGCUGCGGACUGGGCCGACUUGGGCCGGGGAGAGAGAGAGAGGGUUUUGGGCCGACUUUUGGCCCAAAGCCAAAAGAGACUUUUAAAAACCUUUUUCAAUUUAAAUUAUUCAUGAAAUGCAAUUCCAUUUAUUAAAAAUACUUCCUUAGCUCAAAUAAAUCCCAGAAAAAUCUAGGAAUUAUAGAAUUAAGCAAAGUAUUUCAUGAAAUUUUAUCUGGCCCCAUUUUAUAUUGGAAUUUAUUAAUUAAAAUUAGAUAUUCUCUUCUAGACUUUUUAAAAUCAUUUCUAAUAAUUCCAAUUAAACAACAAUUUAUAUAUUUUGGAUUUUUAGGGUGUGACAAGUACUCCCCUCUUCCGUGGGGAGGGCCUGACGCUGUCUGUGGUGGCCGCCACCGUCGGCUCUUGCUCCGUCACCGGUGGAUGAAUCUGGGAGGAAGGCAGGGAGGAUUGGAGCACCGCCGCCGCCUCCCUUCCUCAUCGCCAAGCUGCCGCCAGGCCGGGAGAGGGAGGAGCUGAGCCUCUACCUCACCUCCUCGUUGCUGAGCGGCCGCCGACGGCAGGAGAGGAAGGAGCUGAGCCGCCACCUCACCUCCUUGUUGCUGCCGCCUACCCUCCCCUCCCUGAGACCGGCCGACAACGGAUCUGCGUGCCUCGGACAAGCCGGCAGCGGAUCCAGGUGACGGUGGUGUCAUCGUUGCAGCUGGCGGCGGGACCAAGGCAUUGGCGCCACCGUCGUCAUCAUCGCAGCCAGCGGCGGACCUCCCCGGAGCAGCCGACGCUCCACAGCCGAUGCGUGAUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGAGAGAGAGAGAGAGAGAGGAGGGGGAGGGAAAUGAGUGGUGGGGAGGAUAAGGAUGGUGGAAAAGAUAAGGAUUGGACUUGGAUAUUUUUUCUGCAAGCAUAUAUGAUUUCUGUAGGUGGACCACAUAAGGUUCCACCUGCGAAAAUCAUAUUUUUCCAGGCAGACCCCAUAAAUAUAUUUUUGCGAAAAAUUGAUUUUCACAGGCGGGGUUAAAUCUAGAGGCUCUUUAGCCAUUUUUGCAAACAGUUAUAAGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.34%
ME_num:
MEP:
35.77%
HE_num:
HEP:
17.68%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.83
Avg Expression:
6.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 11.0067933564881 | 8.11524567685565e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.59143170139136 | 0.00843813311877996 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.88976721843681 | 0.00666288041834563 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.26722435270542 | 0.0256886326061218 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 1.40552491373996 | 0.0270972891055651 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.08065957487215 | 4.26179644530883e-14 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.75514337689725 | 8.02879257736074e-07 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.3487589964176 | 9.95938924878288e-05 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 9.74099216758891 | 4.50613679967127e-12 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.39488381215662 | 0.0034480965000323 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.67952954666551 | 3.32211425919886e-07 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.07300183600377 | 0.00548863720022178 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.40769814666406 | 0.000302833686900128 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.29384213326709 | 0.0353423718394152 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.19767217663056 | 1.01404129966039e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.85040901427638 | 1.30988941021365e-05 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.1977748993802 | 1.05249399167396e-05 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.19783457542342 | 1.02094424112632e-05 |