Chr:
Chr8
Start:
14516609
End:
14518979
Strand:
+
Ref_name:
OSA-LNCN7097
Sequence
(OSA-LNCN7097.1):
CCCUAAGCUAAGCCCCCAACAAAAAUCCCUAUUCCUCUCAGCUUUCUUCCCGAAUACAUUUCAUCGAACACCUUGUGUGCGUAAUCUCACCGCUACCAAAGACCAUAUUGAGGGACUCCCCGUCCGGACCUAGAGGUUGGAGGGAGUGGAGGGGGUGUCGUGCUGCCGCCAUUGCCAUUGGGGAAGCCGAGGACCGCUGGACACCGGGAACCACGCGUCGAACACUUUCGGGCGUCACCAACAGCUAGCCGCGUCUGCUUCGUCUGCACCACACCACGCGUCGCCGCCCUUCGCCGUCUCUCCAUCUCAGGAAAUUGUAUAUCGGUUAGUCGUGAGGCAACGUAUGCAGCUACCAGGAGGUGAAGGUUGAUCAAGAUUAUAUCAAGAAUAAGAACUAUCCUGAGCAGGCAAGUCAUCACCCCAACCCUUGAGCAUGUUGAUCCCAAUUGUGAAAUUGCUUUGUUUACAAAUAAAAUUGCAUGCGGUGAUGAAUAUCCUAUUUGUUAUUAUGCCAUGCCUUUGAUUAUUGCUUAUCUCAUUAUUCCCUUGUACCCAUAAUUACGUAUGAGUCCCUAGUCACUUAUGACAAAUGCUUAGUAAUGCUAAUUUAGAUUCAUGCAUUCUCAUAUUUAUCAAAUGCUUUAUGCGUGGGCAACUACCUUGGGGAAGGUAGUUGAGAUACGGCAUGUGGUGACAUGAAUGCCACAUUGCCAUGACAUUGAUGAGAUGAUUUGUGAAAGAAAAUUAAAACUAAACAAAUGUUUUCGAUUGGGGCGGCCGGAGGACUUGGGUGGUGUCCGGUAAAGGCUAGUGUCGUCCCUAAUCAGUUAAGGACCGAGCCAUGAAGCUAAGCAUGAAACGACCCCCAUAUAACCGUACUUCUCGAGUGGGUAUAGACCUAGCGGAGUAAAUAGCCGAGCGGAGGCAGUAUCCCUGCAUAGUGGUUUUGUUGAUGUGUGUGAGGCAGGUUCUACGGUGGGCAGCCAUUGGUAGGACCGCAAGGGGCGGGUGCCUACAGUGGUGUCACCAUCGGUAGGACUGCCAUGUGUAAACCUAAACUUAACUAUAAUUUAAUGCAUGUGCUAGUCUUCCCUUCACGGGAGCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.07%
ME_num:
MEP:
20.12%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.93
Avg Expression:
2.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.55527168583316 | 0.0101544343737179 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.51744485386566 | 0.000143172793669753 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.33277928113664 | 0.0160106126183597 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.62903173717688 | 0.000498670637348047 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.22970461049322 | 0.0447859605771316 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.91634385100505 | 4.00959459873274e-05 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | 3.2264425156031 | 0.00360320259761192 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.73274312632222 | 0.00233184756332731 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.97975352532988 | 0.00104025789775852 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.06524910487366 | 0.00145973075275068 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.74189436519628 | 0.0372760138348737 |