Chr:
Chr8
Start:
13630930
End:
13650865
Strand:
-
Ref_name:
OSA-LNCN7083
Sequence
(OSA-LNCN7083.1):
CACUAGUCCAGCCCACCUCCCCCACCAAAUACCCUAGGGAGAGGCGACUCCCACCUUCCCAGCCGACGCCGCCACACCUCCCCCUCAGCACCUAUGGAACUCACGUGUUCCUUUCUCUCCUGUUAACCCUACUCCAUGGAUCUCCAAGAACCAUAGCCCUAAUCAAGAAUCUGAUUGGAAAAACGGAUCGAGGAAGAGGAGACGAGUAGGAAGAGUGGUGGGUUGGUUUUCCCAUCAUACUCUCAAGUUCUCCAAACCCUAGGUGGUGGUCCUUCAGAUCGUGUAUGAUACCAACCCUUCAUUGGAGUGUUUUCAGGUGCUUAAAGUGACAUGCUCGCUUGGGGGAAACGGGAGUAGAAGCACAACGGCAUUCCACACUGCCACCUUAAUCUUUAAAGUUGUCAUGAUUUUUGUAAAAAAGGAAUUGUACCCUUGUUAAGUUGCACUAGAUGAAUCUGGGAGUUGAAAUUAGUUUAUUUCAUCCCUGAAUGUUCCUUUCUCCUUGUUUUUUUGUGGAUGGCUACUUGCAAUGCUAUACUUAUUUUUGAUGCUUCCGUAAUGCUUAUGUUUUAGAGGAGUUGCUGUCGAAAUUUCUCCUUCUUUGUUAAAUGUAUGUCUUUUUGGUAGCAUCCCGGUGUCUUUGUAGUUUCUGGCGUGUUACAUUUCGCAACUGUGAUAAUAUUGCUUAGAUAUAGGACCGAGUUUAAACUAAGCUUUAAAAACAUUAAAAUAUUGCAACUUUGGCUUUACGCAAAAAUGAACCCUAUUAUGCCAACUCUUUGUUCCCCUUUGCACUAAAAUUCAUUUCCCGGCAUGGCAUGCCGAGUACGGUGGUUGUACUCAUCCUUGCUCAAUCUUUC
Sequence
(OSA-LNCN7083.2):
CACUAGUCCAGCCCACCUCCCCCACCAAAUACCCUAGGGAGAGGCGACUCCCACCUUCCCAGCCGACGCCGCCACACCUCCCCCUCAGCACCUAUGGAACUCACGUGUUCCUUUCUCUCCUGUUAACCCUACUCCAUGGAUCUCCAAGAACCAUAGCCCUAAUCAAGAAUCUGAUUGGAAAAACGGAUCGAGGAAGAGGAGACGAGUAGGAAGAGUGGUGGGUUGGUUUUCCCAUCAUACUCUCAAGUUCUCCAAACCCUAGGUGGUGGUCCUUCAGAUCGUGUAUGAUACCAACCCUUCAUUGGAGGUGCUUAAAGUGACAUGCUCGCUUGGGGGAAACGGGAGUAGAAGCACAACGGCAUUCCACACUGCCACCUUAAUCUUUAAAGUUGUCAUGAUUUUUGUAAAAAAGGAAUUGUACCCUUGUUAAGUUGCACUAGAUGAAUCUGGGAGUUGAAAUUAGUUUAUUUCAUCCCUGAAUGUUCCUUUCUCCUUGUUUUUUUGUGGAUGGCUACUUGCAAUGCUAUACUUAUUUUUGAUGCUUCCGUAAUGCUUAUGUUUUAGAGGAGUUGCUGUCGAAAUUUCUCCUUCUUUGUUAAAUGU
Sequence
(OSA-LNCN7083.3):
CGCCACACCUCCCCCUCGGCACCUAUGGAACUCACGUGUUCCUUUCUCUCCUGUUAACCCUACUCCAUGGAUCUCCAAGAACCAUAGCCCUAAUCAAGAAUCUGAUUGGAAAAAACGGAUCAAGGAAGAGGAGACGAGUAGGAAGAGUGGUGGGUUGGUUUUCCCAUCAUAUUCUCUCAAGUUCUCCAAACCCUAGUGUUUUCAGGUGCUUAAAGUGACAUGCUCGCUUGGGGGAAACGGGAGUAGAAGCACAACGGCAUUCCACACUGCCACCUUAAUCUUUAAAGUUGUCAUGAUUUUUGUAAAAAAGGAAUUGUACCCUUGUUAAGUUGCACUAGAUGAAUCUGGGAGUUGAAAUUAGUUUAUUUCAUCCCUGAAUGUUCCUUUCUCCUUGUUUUUUUGUGGAUGGCUACUUGCAAUGCUAUACUUAUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.85%
ME_num:
MEP:
18.5%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.90
Avg Expression:
5.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.12959022048723 | 2.29453848784573e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.92271478255807 | 0.00031850992268125 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.02779852245256 | 1.82108928305139e-13 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.80372190618889 | 1.59900516542107e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.79404662143529 | 0.00148402385378297 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.21007780574018 | 1.15214499657892e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.12869715066967 | 0.0467160786944925 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.66355075215738 | 1.67472499112182e-10 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.23017457404458 | 0.0241021699982347 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.48814719165214 | 5.26821815119043e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.33344199978534 | 5.88348991405211e-08 |