RiceNCexp:Browse

OSA-LNCN7081

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr8

Start:

13471650

End:

13479970

Strand:

Ref_name:

OSA-LNCN7081

Sequence
(OSA-LNCN7081.1):

CUGACUUCAAACGGCCACCGAAUCUGCAUACGACCUCCGUUUUCGGCCAAUGAGUACUUGAUGGAAAGCUUUCGGAGCCCUCUUUCCAACGGAUCCAGCCUCAUCUCCGAAUUCCAUCUCGUGUGGCCAGAAUCACACGCACAAGGUGCUGCGUCACCUAUAAUGGGCCUAUGGGCUUGUAACUUCAUUUGGGAUCCCGGCCCAGGUGGGGCCCAUGUGGGGUGCGCCCCAGCCAGGUGGAGCACGACCCUAGGCACCCCUAGGUCGUCCUCCCACCCCUAUUUAUAUAGCUAGGUACCCCUUCAGGGUUUCUUGGGUUUUGUUAGAUUAAAGUUUAGCCAUUGCUACUUGCUUGCAGCGCGCGUGUCGGCUAGACCGUCCGUCUGCUUGUUCUUCGGAACCCCAACUUAUCAUUCGUAUUAAAUUCCUAUUUGCAAUAUCAGAUUGCUUUUAUCUUGUUCUUGCUUGUUUCUUCGAUUUGCUUGCAGGAAUAGGGUUGAUCUGCACCGGCAAGAUCAACAACCCACGGAGAGGUGUAUCGAUCGCUAAGGCGCAACACAACGUCUCGUACGGUUGUAGUCGGAUCGUCAACGUUUCUCCCAAAUCGUAGUUAUCACAACUCACCGAAAGAUCGGGCCAACAACAGCCUUGAGUGUCGAGAGGAACUCAGGGUUCAUCACGUUGCCACCCUUGCCUUCGUCUCUCGUCGUCCGUAGCGCCCUAGCCCCGUGAGACCUCGCGCCGCCGUCGUCGCCGCCGCUCCAGCCGUGCGCCGCC

Sequence
(OSA-LNCN7081.2):

Sequence
(OSA-LNCN7081.3):

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

LEP:

5.69%

ME_num:

319

MEP:

64.84%

HE_num:

144

HEP:

29.27%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

callus

Tau :

0.97

Avg Expression:

378.27

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-1.47403213099644	0.00771907496494332
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-1.89560720942133	0.000325585473653898
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.84111447493019	0.000311783676415487
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-1.99466435320124	0.00556491027067773
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-1.6622388737011	0.00729241368278082
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-1.45922939502499	0.00992748149467087
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.09997081858034	3.52056701244114e-05
8	Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"	4.5105144884289	0.00130502735104312
9	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"	3.47453975604014	0.000671515035897213
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-1.87294773049856	0.000269857371827207
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-1.09534717416588	0.010507856318974
12	Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"	7.2538616570458	0.000180178641286029
13	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-2.08842038215783	0.000437698855729384
14	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-2.54721977201038	1.65316127807179e-07