Chr:
Chr8
Start:
13456326
End:
13457153
Strand:
-
Ref_name:
OSA-LNCN7079
Sequence
(OSA-LNCN7079.1):
GUGAACUCAUUUUUCUAGUUUCCCCUCUCUUUCCCCCUCCGAAACCAACCACCACAGCCACCUCCUCUUGUUGUCGGAGCUGUGCUCUUGUCGCCGCCGUUCCGGCCAUCCUCCUCUUUACCUCUGCCUUCCUCUACCCUCCCCGGGUGCGUGAUGCUCGGGAACACGCUUGGACGCCAUCGUCGAGGCCGUUCAACCACCGGAGCACCGACGCCCUUCUCCCUCCCUCUCCUCUGUACCCGGCUGGAAGGAGAAGAGAGGAAGAAGAAGACGAGAAAAAGAGGUUGAAGGAGCACUUGACAGUGGGCCCCACUUUUAUAAAGGGUACAUAAUGUUAUAGGGUCUCAUGGGCCCCUGAUGGGCCGUCUAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.88%
ME_num:
MEP:
15.24%
HE_num:
HEP:
4.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.87
Avg Expression:
2.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 2.04389247210719 | 0.00853934357953834 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.95295940396419 | 2.74794866280576e-05 |