RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7075

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

12993658

End:

12995557

Strand:

.

Ref_name:

OSA-LNCN7075

Sequence
(OSA-LNCN7075.1):

ACGUGUGGCAAUAUCGGUAUUAAUUGAGAAAAGUUCGCCGCGCGACUAGCGAAGUGAGUUUUUACCACGAAUGCACCUAAUACGCUCCAAUAUGUCCAAAAAUCACGUUUUCGUGCUUGUUGAACUUUUUCAUUCCGGAAUAUAACAUCGCACCAAUGUGUGGCAACAUCGACAUUAAUUGACAAAAGUUCGCCACGCGAGACGCGAAGUGAGUUUUUGCCACGAACGCACCCAAUACAAUCCAAUAUGUCCAAAAAUCAUGUUUUUCGUGCUUUCUGAACUUAUUGAUUCCGGAAUAUAAGAUCGCACCCAUGUGUGGCAAUGUCGGCAUUAAUUGACAAAAGUUCGGUGCGCGAGUCGCGAAGUGAGUUUUUACCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUAUUUUGGUGCUUUUUGAACUUUUUCAUCCCGGUUAAAAACAACGCUCCCACGUGUGGCAAUAUCGGCAUUAAUUGACAAAAGUUCGCCGCGCGAGUCGCGAAGUGAGUUUUUGCCACGAACGUACCCAAUACACUCCAAUAUGUCAAAAAAUCAUAUUUUCGUGCUUUUAAAACUUUUUGAUUCCGGUAUAUAACUUCGCACCCACGUGUGGCAACAUCGGUAUUAAUUGACAACAGUUCGCCGCGCGAGUCGCGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCAAAAAAUCAUGUUUUUGUGCUUUUUGAACUUUUUGAUUCCGGUAUAUAACUUUGCACUCACGUGUGGCAAUAUCGGUAUUAAUUGACAAAAGUUCGCCGCGCGAGUAGCGAAGUGAGUUUUUGCCACGAAAGCACCCAAUACACUCCAAUAUGUCCAAAAACCAUGUUUUGGUGCUUUUUGUACUUUUUUAUUCCGGUACAUAACAUCGCUCCAUGUGUGGCAAUAUCGGCACUAAUUGACAAAAGUUCGCCGCGCGAGUCGUGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCUAAUAUGUCAAAAAAUCAUGUUUUCGUGCUUUUUGAGCUUUCUGAUUCCGGUAUAUAACUUCGCACCCACGUGUGGCAAUAUCGGUAUUAAUUGACAAAAGUUCGCCGCGCGAGUAGCGAAGUGAGUUUUUGCAACGAAUGCUCCCAAUGCACUCCAAUAUGUCCAAAAACCAUGUUUUGGUGCUUUUUGUACUUUUUUAUUCCGGUACAUAACAUCGCUCCAUGUGUGGCAAUAUCGGCACUAAUUGACAAAAAGUUCGCCGCGCGAGUAGCGAAGUGAGUUUUUGCCACGAACGCACCCAAUACGCUCCAAUUUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAACUUUUUCGUUCCGGUUAAAAACAACGCACCCACGAGUGGCAAUAUAGGCAUUAAUUGACAAAAGUUCGCCGCGCGAGUCGCGAAGUGACUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUAUCAAAAAAUCAUGUUUUCGUGCUUUUUGAACUUUUUGAUUCCGGUAUAUAACUUCGCACCCACGUGUGGCAAUAUCGGUAUUAAUUGACAAAAGUUCGCCGCGCGAGUAGCGAAGUAAGUUUUCGCCACGAAUGCACCCAAUACACUCCAAUAUGUCCAAAAACCAUAUUUUGGUGCUUUUUGUACUUUUUUAUUCCGGUACAUAACAUCGCUCCAUGUCUGGCAAUAUCGGCACUAAUUGACAAAAGUUUGCAGCGCGAGUCGCGAAGUGAGUUUUUGCCACGAACGCACCCAAUACGCUCCAAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAACUUUUUCGUUCCGGUUAAAAACAACGCACCCACGAGUGGCAAUAUAGGCAUUAAUUGACAAAAGUUCGCCGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

480

LEP:

97.56%

ME_num:

0

MEP:

0.0%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

1.00

Avg Expression:

5.62

Tip: OSA-LNCN7075 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.361576413257690.0437197312351679
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-4.47231179036750.0353739907589657
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.173571879445530.0480780593785793
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-4.650158155417330.0272197486761699
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-4.788423300796030.0174345130622391