RiceNCexp:Browse

OSA-LNCN7073

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr8

Start:

12903317

End:

12903690

Strand:

Ref_name:

OSA-LNCN7073

Sequence
(OSA-LNCN7073.1):

GGGCCAAGAUCUGAAAAUGUUUGGCCAAUGGUUGAACUUUGGUUUUGAUUCUCAGAAGGGGAUUCUAUUUGUCUCGGUAGUGAUGAAUAUUGUGGGGUCUGGAUCACCCAUAGGGCCAAGGAAGUAACGGGUAUCGGCGUGAACGACGGGGAUUAAGACUUGAUCUCUAAGGUGCUGAAACAAAGGGUUCAGAAAGCAAGAAACCCUAAAUAUUGAUUUCGAGCGAGUUUUGCAAAGGAUAGUCGGUGAUAAUGGGUGAAGAACUUACCUCGGCGUCGAAACAAGAUUUUGACAAUACUAGAAUGGGGUAGCAAUCAAGCAGGAAAAGUGGAUGGGUUAAGAGACACGAGGUUUAUACAUGUUCAGGCCCUCUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

475

LEP:

96.54%

ME_num:

MEP:

3.25%

HE_num:

HEP:

0.0%

Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.97

Avg Expression:

0.89

Tip: OSA-LNCN7073 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-4.53112251777994	0.0139314232051481
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-5.03319439282173	0.00491414832363565
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-5.13277089919176	0.00290470405115531
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-5.28304375266622	0.00195978470391406
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-4.283315313842	0.032215265662813
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-4.6977008390576	0.0107354815663499
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-5.392901633766	0.00137018349703267
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-4.03734670521208	0.0272896180164932
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-5.09554180070198	0.00239736835014971
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-5.57183801679222	0.00081008320370162
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-4.98827488181616	0.00510576485290202
12	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-5.70944303558973	0.000383325515499845