RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7055

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

11663527

End:

11674186

Strand:

-

Ref_name:

OSA-LNCN7055

Sequence
(OSA-LNCN7055.1):

UACCGCUGCGAUUUGUUUUUAAGUUUUCAGGGACAGCCUAUUCACCCCCCCUCUAAGCUUCAUCAGCGCGUUCAUCAUCAAGGGUCUUAUCGAUACUCGUUGGUUUUGUGGUUCUCUAUUUGUAAUCUAUGUGCUUUUCUUAAUAAACUGGAUUAUGGCUAUUACCUUACGAUGGGCCUGAACCAGUAUAAUCUCUGUUUUGUGUGUGCUAGAUGUCGUAUCAUGUAGAUCCUUGCUCCAACGUACCCCAGUACCCCCAGAAUACGGUCUACGGGUAUCGUCCAUCAACAGCAAUAUCUUGGUGAUGCUCUAAUGAGCAAUCAGUCGUGCGCACUCAUCCGCGUGGCCAGUUUCUGUACGCUUGUCGUUUCCGUCACUUCGAAGGUUCGCAAGUGCGUCGGAAGUAUUAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGGCAAGUCACACAGAUCCCAAACACAAUUCCUUUGAGCAUGUUUAUCCUAUAUUUAAAUUCUCUAUUUAUUUCAACUGCGCAUUUAUUUUCGAAUGUCACCGGGUGGUGUGAACCUGUUCAUUUGUUAUGGCCAAUUUGCAUUGAUUACCCUAUGUCUUGAUCACCUUGGGUUAUUAUAAUUUGACUAGUUGAGCUUUAUAUAUUGGUUCAGCUAGAUGUUAGACAUAAUUGCUUAGCCAUACUUAGAAACAUUAGCACACAAUUGGGAUAACUAAUGUUCCACUAUUACUUAAUGAUGGAUAUUUAAUGAUAUUUCACGAUGGUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

461

LEP:

93.7%

ME_num:

30

MEP:

6.1%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.95

Avg Expression:

1.17

Tip: OSA-LNCN7055 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-4.486216875354380.0277098147512223
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.728948305143160.0153834751597893
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-3.845167975788990.0390901726222458
4Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl3.140777947392120.0277663405759389
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-5.010668779952340.00882821594251725
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.446205556928760.0287407759720311
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-4.149152216907710.0200207073630385