Chr:
Chr8
Start:
11557934
End:
11564074
Strand:
-
Ref_name:
OSA-LNCN7049
Sequence
(OSA-LNCN7049.1):
UGUGACCGGUCACAGACCGGUCAGAUCGCGGGAUAGGUGGCAACAGGCGGCCUGUCGCACGCCUCGCCCCGUCCCGUCGGAAUGAUGAGAGCUUCCUGGCUCUCGUCUCUAGCCGGAGCUGGCGUGCUGACUCCUGGAGUUGGUAUGUCAGUCCCGGUCAGAUCCAUUCUAGGCUUCAGCGCAAGCAUGGCAAGAAAGUCGCUGGCCAUUGAAUGAAGGUUGAAACGGGCGUCCACCGGGAGAGCUGACGAGCGGAGCAGAAGACGUGUGCUGUGCUUGUCAGAGGUCACUUCCGGCUGUAGACUAGCCCUCAUUGUAAAAAGCAUGUUUCCUUUCUUAGGCAGCGAGAGGCCCAUGUGGUGACCCCUGACCAGAUAAAAAGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.46%
ME_num:
MEP:
43.7%
HE_num:
HEP:
14.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.72
Avg Expression:
7.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.09821085155582 | 0.015020447519642 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.29276806297607 | 0.0329716081638839 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.75388972689266 | 0.0218432226747817 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.38449987014549 | 0.0479135950430705 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.02680194750355 | 0.0260865958713712 |