Chr:
Chr8
Start:
10565461
End:
10569229
Strand:
-
Ref_name:
OSA-LNCN7034
Sequence
(OSA-LNCN7034.1):
GUGAGGAUGUUGCCGGCGUACCUGCCGGCGUUGGCCAACCUGAUGUCCAACACGCAGAUCCCAUCUCGCCGAGCGCUGGCCUCAGCAUCGUCGACUCCACUCCGGGGACCGUGGCACCACCGCCAGAGGGGGGUGGCGACCGCCUCUUCAUCGAGCCGAGAUCCACGGCCAUAGACCCGCCGGACGAGCUCCCCCCGCAGCCUCAGCCUCAGCCCCAUCGCGGCACCGACUACCCAGCCUCAUCCGCUCCCUUGUCUACAUCAUCGCCGUCGCCGUCGACCGGGAGGAUGAGCUCCCUGCUCCAGAACCCGUAUCAGCUCCAGCCCACCGCCGCCGCCACCACACCGCGGCCCAUGCCCCGCCGCCUGCCGAAGGGGAAGAAGGGAGAGAACGAGAGAGAAGGGAGAGAGGGAGGAGGAAGAAGGGAGGACUGACAUAUGGGCCCCACAUGUUAGUGGGCCCACAUUUCUUUUUGUGUGAAUGACAAACAGGUCCCACGCAUAUUUUUUAAUUCUAAUGCCACGUAAGUGCCACGUCAAUGCCACGUGGAACGAAGACUCGGUCAAUAUCGCAACGUAGGCACCACGUCAGUGAAACCGCUCUACAAAACCGCCGAGGGAGUAAAUUUGUAUUGGUUUUAAGAGUUUGGGGGUCGAGAUAUCCGGUUUUGUGGUUUAGGGUCACGGAUUAGAUUUCGAUCACUCCUGAGGGUCACAAAGUGAACUUAUUCCUGAUGCGCACGUAUUUGUCUCUUUGAGGCUAUGACAUGGGCCGAGGGAUGUUGCGGCUGCUAUGGCCAUGGUUUUGAAUCUUUUGAUGGACUGCGCACCCGCAGGCUUCCAAUUGUACUCCUUGUAGGGCUCUACCUUGUUUGGCUCGUGGGCAGCUCGUAAGUGGAGACUGCGACAUCUUCCACGGCAGUGGGUGCCUGCCGCCCCCGCCGACGAUGGCGAUGCGCCGAACUACACGAACCGGAGUUGCGACGAGAUCGGGCCCAGGUUUUUCAACUUGGGUAUUCGAAAUUGUAAGAGAGAGAGAAAAUUUUCAAACCCAAGGUCUAAUAGUUGUAUAAUAUGUAAAGGUAUAAACAUGUUUUCAUAAAGUUAUAAAUGAAUAGAAUUGACCAUAAAUUGAAUGCGUUAAUUUAUUGAGCAUACAAAACCAAGACCAAGAAACCGUUCAACUGGUUGUCCCGUCUUAUUGACAAACCGCGAGCAAAGAACCAGUUGGUUCUUGAUUUCUUUUUUUUAGCAACUUUUUCUAAAAAACUCUUUAAAUUAACCAUGGGACCCUUUUUUUCUCUUCAUGUUUCAAACCUACAAACAACAAUAUCAAAGAGCAAUUGAGCAAACUAGAAAAGCAGCACAGGUUCGGUGGUUCCUAAAUCCUAAUCUAGUAAUCUAGAUAGUCAUUCAUAAACUAUGAAGCUAAAAUAAUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.72%
ME_num:
MEP:
52.64%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.82
Avg Expression:
3.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.14883876088074 | 0.0465220884890326 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.41991832163622 | 0.000173411016279676 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.08678019957461 | 0.00169662681286403 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.41453941190004 | 0.0423775870978351 |