Chr:
Chr8
Start:
10221651
End:
10223056
Strand:
+
Ref_name:
OSA-LNCN7025
Sequence
(OSA-LNCN7025.1):
CUGCUGCUGUGAUUAACAUCAUGAUACAAGGUAAAUCCACUAUGUCUGAUGCAAUUUACAUCCAAGACCAACAGAAACUCUGUUACUCCUGUUCAUAUCAGAGCAAUAUCGAACAAAGAACAGAGCAAAGUUCAUACCAAGAUUCACAACGUUCUCAGAUUUCUAUUGCAUUUGAUAUAGACAUAUAGUUACAGCCAUGAUAAUACAAGAUGAUGUAAAUAUAGUAGAUAGAGGCACAUGAUUAGUUGUGCCAGACAUUAGUUACAUCAAGAAUCGGAGUUGUCCUGUUACAAGGUGGUGCCUACAACUAAAAGAGCCUAGUAUCCGUGCAGGAUGGCGCAGCGAGGGUGGUGAUGGUGGCCGCCGGCGACCUGGACCGCGCGCGGCGAGCAGGCGAUGCUGGAGCCGCGCCUCUGGUAGGGAUGGUGGCGGCGGCGGCGGCGCCACAGCGGAGACGUGCCAGACUCUGCGUCGGACGGCACGGGGGACGGAGGCGGCGUGCUGGGGCUGUACUCCGGCGACGCGGCCCGUGGCGGUGGGGACAACGGCGUGUAGUCCGGCGACGCGGCCCGGGGCGGAGGCGUCGAGGGCGUGUAGUCCAGCGACGCCGCGCGGCGCGGAGGAGUCGGAGUCGAGGGCGUGUAGUCUGGCGACGCGGCGUGGCGCUGAGGAGUCGAUGGCGUGUAGUUCGGUGACGCGGCGCGGCGUGGAGGCGUCGGAGUCGAUGGCGUGUAGUCCGGUGACGCAGCUCGGGGCGGAGGCGUCGAGGGCGUGUAGUCCGGUGACGCGGCGCGGCGCGGAGGAGUCGGGGUCGAGGGCGUGUAGUCCGGUGACGCGGCGCGGCGUGGAGUAGUCGGAGUCGAGGGCGUGUAGUCCGGAGACGCGGCGCGCCGCGGAGGCGUCGAUGGCGUGUAGUCCGGCGAGGCGGCGCGCCGCGGACUCCCCAUCACCAUCGGGCUCGACGGCGUGUACCCCGGAGACGAAGCACAGCAGAAGCACCCCUCGCCGCCGCUACCGACACCUAGCUCCUGCAAGAAGAACAAGAAAGGGGCAUCACCACGUACCUGAAUCCGCGAGGAGCCGCAGCAGCAGCAGGAGGACGCCGAUGAGGAGAAAGAAUCCGCGGCGGCGGAGCAGGACGCGCAGGAGGACGCCGCCAUCGCCAUCGCCAUCAGAGCACGAGAUCGCGGGGGAGAAGAAGAAGAAGAAGCGGAUCGGAGGCGGUAGAUCGAGCGAGGCGCGGCGGGGUGGGAAAUGGGAGAGGGGAUCGAGAGGGGCGCGGCCUUUUAUGUAGGGCGAGGCGGUGCGAUGCGACCAGAUCGAAACCAAAAAUCGGGAGUCGGAGUGCAAUGACGGUAACUUGGCGCGCCGGGAAGUUCUCGCGUGGGGAGUGGGGACAACGCGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.03%
ME_num:
MEP:
28.46%
HE_num:
HEP:
69.31%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.90
Avg Expression:
89.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.8551502934484 | 4.06386712217939e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.02197377459423 | 0.00659611434631203 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.53159582234146 | 1.86026092607375e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.61819454250804 | 1.22169649235363e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.42022470615059 | 5.06571354269553e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.89748822995659 | 4.59524051350665e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.24941189905939 | 0.000513628739483661 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.11056661606602 | 0.00101190041030057 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.2104743062751 | 0.000205154357599551 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.62508167017584 | 0.0015225354770857 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.35666532651215 | 4.69671150758739e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.27450459985122 | 1.04223619907492e-08 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.56481894996335 | 3.45050458759254e-05 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.34980382488135 | 1.36615558399097e-06 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.5305664039674 | 1.81418535014281e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.91419948380336 | 1.07020784461275e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.59185634764626 | 0.000189842227549953 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.20284649603353 | 2.15214252474001e-09 |