Chr:
Chr8
Start:
9743223
End:
9746317
Strand:
-
Ref_name:
OSA-LNCN7010
Sequence
(OSA-LNCN7010.1):
CCGAGAGAGAUCAGAGAAAACGAUGGCGCAAGAAUGGCUCGGCCCCACAGCUCGAGCAGCCCCUGUCCCUGUCAGGGGACGGCGCCGCGCUGCGGGAAGAACGAGGGAGGCGUGGAGGAGAGCACGAGGUGGCAGGAGCAGCAGCAGCUGGAGGAGGAGGAGGAAGAGGAGGGGGAAUAUACACAUGGAAAAAUUUGGCAAUUUGCGCCGUGUUUUUUUCUACUCCUCCAUCUUGUUCAGUUAGUUUCUGUAGCUGAAGCCGCUGGGGAAGGGAGGAGAGGUGGAGAGGAGGAGCAGAAAGGCGUGGAAUUUGGGAGGUUGUUUGUGACGUUUGCUCUUCGGUUGUAUCAGAAAUUCAGGAUUCAGAAGCUACCUACUGGCAGUUUCUUCUCCUUUUUG
Sequence
(OSA-LNCN7010.2):
CGAGAGAGAUCAGAGAAAACGAUGGCGCAAGAAUGGCUCGGCCCCACAGCUCGAGCAGCCCCUGUCCCUGUCAGGGGACGGCGCCGCGCUGCGGGAAGAACGAGGGAGGCGUGGAGGAGAGCACGAGGUGGCAGGAGCAGCAGCAGCUGGAGGAGGAGGCAGGAGGAAGAGGAGGGGGAAUAUACACAUGGAAAAAUUUGGCAAUUUGCGCCGUGUUUUUUUCUACUCCUCCAUCUUGUUCAGUUAGUUUCUGUAGCUGAAGCCGCUGGGGAAGGGAGGAGAGGUGGAGAGGAGGAGCAGAAAGGCGUGGAAUUUGGGAGGUUGUUUGUGACGUUUGCUCUUCGGUUGUAUCAGAAAUUCAGGAUUCAGAAGCUACCUACUGGCAGUUUCUUCUCCUUUUUG
Sequence
(OSA-LNCN7010.3):
CGAGAGAGAUCAGAGAAAACGAUGGCGCAAGAAUGGCUCGGCCCCACAGCUCGAGCAGCCCCUGUCCCUGUCAGGGGACGGCGCCGCGCUGCGGGAAGAACGAGGGAGGCGUGGAGGAGAGCACGAGGUGGCAGGAGCAGCAGCAGCUGGAGGAGGAGGGGGAAUAUACACAUGGAAAAAUUUGGCAAUUUGCGCCGUGUUUUUUUCUACUCCUCCAUCUUGUUCAGUUAGUUUCUGUAGCUGAAGCCGCUGGGGAAGGGAGGAGAGGUGGAGAGGAGGAGCAGAAAGGCGUGGAAUUUGGGAGGUUGUUUGUGACGUUUGCUCUUCGGUUGUAUCAGAAAUUCAGGAUUCAGAAGCUACCUACUGGCAGUUUCUUCUCCUUUUUG
Sequence
(OSA-LNCN7010.4):
GAGAGAUCAGAGAAAACGAUGGCGCAAGAAUGGCUCGGCCCCACAGCUCGAGCAGCCCCUGUCCCUGUCAGGGGACGGCGCCGCGCUGCGGGAAGAACGAGGGAGGCGUGGAGGAGAGCACGAGGUGGCAGGAGCAGCAGCAGCUGGAGGAGGAGGAAGAGGAGGGGGAAUAUACACAUGGAAAAAUUUGGCAAUUUGCGCCGUGUUUUUUUCUACUCCUCCAUCUUGUUCAGUUAGUUUCUGUAGCUGAAGCCGCUGGGGAAGGGAGGAGAGGUGGAGAGGAGGAGCAGAAAGGCGUGGAAUUUGGGAGGUUGUUUGUGACGUUUGCUCUUCGGUUGUAUCAGAAAUUCAGGAUUCAGAAGCUACCUACUGGCAGUUUCUUCUCCUUUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.71%
ME_num:
MEP:
32.52%
HE_num:
HEP:
10.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.91
Avg Expression:
13.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.52811787706039 | 0.0271280251624012 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.76547207811835 | 7.56999344510979e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.0162762225693 | 0.0163775230507512 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.76927680142638 | 5.02997753521119e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.35847059337612 | 1.07501110448681e-05 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | 1.48035258659523 | 0.00321403262750014 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.8328313014269 | 6.9097455508995e-18 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.01418302289548 | 8.12308889340534e-16 |
| 9 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.45468299569937 | 7.15404745745749e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.98895144750121 | 3.01997756899536e-10 |