Chr:
Chr8
Start:
8972451
End:
8979441
Strand:
-
Ref_name:
OSA-LNCN7002
Sequence
(OSA-LNCN7002.1):
AUAGUUAUUGUGGUUUUAUAAAUUCCCAUUAUCUAAAAAAAAAAAGUGUCAUAGUUGCAGUCAACAUUCAUGGCAGAAUUCGGCGAUCCCGUUCUACUUUCCAAUGGUUUUUGGGUGGUGAUGGCAUGACGCAUGCAGGAGUUAUCUGUUUUGGGCCGGUGGAAUGUUUUCCUUAUCAGGAAUCCUUGUUGGGAAUAUUCAGUUAUUCGGUUCUCUGGUGGAAUGCUCCACUUCGUUCCAAUUGCAAUAAAAUAUAAAAGAAUAAUUUUCUCUCUCUUUUUAGUUAUCUGAUUGUUUUGAAGUGCCAGAAUUCAUAUAAAUUUGACCCUUGUUUAUUUAUGGUUUGAUGCCACAUAGUAGAGGACGUAGAACCAUGGUUAUAACAUUUAUAGGAUUUUUCCUGAUUUAUUUAUAUUUCCAAUUCAAAAAUGUUUUUUGGAGGAUUUAUAGAUAAGUCGGUAUUGCUGAAGUGAAAUAUGUAUAUCUCUGAUGUGGAGCAGCACUCUUUUCGGAUGCAACUUCAAACCUGUGUAUUUGCAGUUCUUGCACAACUUUGCCUGCAUAAAUCCCAUUCUCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.66%
ME_num:
MEP:
35.37%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.90
Avg Expression:
11.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.50637343428737 | 0.0311314884857725 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.62251232746991 | 0.0108078188678244 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.65193103730812 | 0.0177306188173444 |