Chr:
Chr8
Start:
8956219
End:
8956873
Strand:
-
Ref_name:
OSA-LNCN6998
Sequence
(OSA-LNCN6998.1):
AAUUUCACAUGUUUGUAUUUGAAAAGCUCUUAAAUUAUAAAAACUAUAAAGAUAUAGCAUGCUGGCAUGAUGUUUAAAUGUGAUGAUUGUUAGUGAAUGAUGACGUGGUAUCUUGUUAAUUAUGAUGAUGAUGUGGCAUCUUUACAUGUUAAGCUUAAGAAGUUAGUGGUGAAAACUUUAUAGUAAGAUAGGAUUACAGGUCUUAUAGCUUCAAAUGGAAGCUCACUAUAUUCUGGACACAGGAUAGGAACAAAGAAAUCAAGUACAUCCCGGAAACUACAACGGAUAAUAGGUCAAUUGAAGCAAAUUGACCAAACGAUCUCGACAAAAUAGACCUAACAAGGAGACACGAGCAAAUGUAUCAGCAUGAGGACAAAACUAACAGUGCCAUAGCAUCAUUUAGUAACAGUUUCAUUCCCUAUCACAAGCAUCAAAUUGAUUGUCCACCGCCCAUUCUAUCCACUAAUUGUCUCUCAAGUAGCAAUCCUUCUAAUUCCUAGGUCACCGAGUCACGGAGCAAGCAUAAUUGACCAUACUCAUAUCCAUAUUCACAACUCAAAUGGAAAAAAAAAAACAAUUCUACUACUUCCACAGGUCGCGCACAUACAUACGAAAUGUGGGGAUUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.02%
ME_num:
MEP:
54.47%
HE_num:
HEP:
31.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.93
Avg Expression:
56.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.1389696642062 | 2.99247930312475e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.47397327475822 | 1.82770727405694e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.60676188448276 | 2.31646146981814e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.78187489195601 | 3.21556366034375e-11 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.78396760264675 | 5.81759830435587e-05 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.82025179102909 | 0.0157809307319892 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.78868119873676 | 3.21387142476965e-14 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.19210629804259 | 1.54898358574833e-08 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.04819192533647 | 0.0467659701417942 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.49105478053122 | 0.000836641353369411 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.26878876420284 | 9.06821428118507e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.10673131780836 | 4.16339818640201e-06 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.35642407174587 | 0.013879813420406 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.52648983355598 | 1.41438453369304e-13 |