RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6972

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

7996153

End:

7999248

Strand:

-

Ref_name:

OSA-LNCN6972

Sequence
(OSA-LNCN6972.1):

AACAAUAUCAUGAUAUUGGUCAAUAUUUACUUAGUAGAUUCUUUAAUAUUGUCAUUCACUAAUAUCAAGUUGCAUAAUAUAUCAACUCAUGUAAGUGAACAAUCAUAUUAAAAUAAAUAUUCUAAGGAAGUAUGGACGUUACCAUAUUAAAGAAAACACUAUAACAUAAUAAACAACUUUGUAUCAUCUCAGGUGGACGUUAAAAUAUUUUUUUAUAAUUUUAAAGUUCAUAAUUUUUGAAGAAUAAAGAGAAAACAGGUCUUCAUAGGCAGAUAUCUUAAAGAACCAUCGGUAAAAAUAGAAAACCCAUAUUUCAAGAAAAAAAAUUAAACUUUUAUAUAUGAAGUCGGAUGAACGUAAAAUUUAUAUGAAAAUUAUAGCCCUCAAUUAUAUUUACAGCUUUUUAUUUGAUUGUUUUUUUCCAUUUCAGAUCAUGUAGGGCCCAAAUAUCUGUUUGCCUAGUAGACCUAUUUUAAAAUUCGAAUUUCCAUGUUUUUCAAAUUAUUUCAGACGUAUACAUUCACUACACCAGAUUGGCCCAUCUGUGACGGCCUAUUAGUGACGGGCCAAAGUGCCUCGUCACAGAUGACCUUAUCUUUGAUGGGUUCAACUGGGGUUCGUUCGAUAUGAGGCUAUAAAAUACGGCCCGUCACAGGUAAAUAGUUAUAUGUGACGGGCCUAUAUAGGAACCCGACAGACCACACCUUUGACGGACCCAGAUAGAGGCCUGUCAUAGGUGAUCCCUUACCUGUGACAAGAUCAACAGUAUAGCCCGUUAAAGAUCAAAAGGGAUCUCUAACGAGUAUUUUUUUCAUGCUGUCAUAGCUGGAUGCCACCGACAACCAAAUUCGUUAAGUUCUCUCUCCCCAACCCCUCUCUCUCUCUCUCUCAAUCUCCCCCCUCUCUCUCUUCCUCUCAGUUCGUUAGCGGAGGCAUCGAUGGGAAAGGGGCCGGAGGCGGAGGUAGAGGCGGGACCGGUGUUGGCGUCGAUUGGAUGCGGAGGCGGUGGGAUAUCGGGGCUGGAGCUAGAGGCAGCGGUUGCUCGGGGUUGGAGGCCGCGUCGACACCGGUAGGAGCUUGGCGGUGGAGGCCUUCUCUUGAGGUCGCAACGCCGUCCUCCCCUCUGCCUCUAGAUCUAGCCUACCCAAGGACAGGGGUCACCGGAUCUGACAGCCCCUAACCUCGCGGCGAUCGGAUCCAGUGGGAUUAGAUGGUGGCAACGGUGGGAGGUCAAGCAUGGAGGUGAAGGCGGAGACGGUGGGAGAUUGGGGGCGGAGCUAGAGGCCGCGGGUGCUCGGGGUCAGAGACAGUGUCGACGCCGGAAGGAGCUCGGGGGUGGAGUCCGCCUUUGAAGGUCCCAACACCGUUCGCCCUUCCACCUCCAAAUCGGUCUACCCGAGGUCAGGGAUCACCGGAUCUGACCGUCCUUGACCUCGCAGCGGUCAGAUCCGGUGGGGACAGAUGGUGGCGCUUGGGAGGUGGAGGUGGAUGCAACGACGGUGCUCAGGAGGUCAAAUCUUAUCAGAAAUGAGUUUGACAUGAUUGGUUCUCCUUUGGAACUUUAGGAUCUCCUUGUCACAGCCAAGUCCCCCUAUCUUUCAUUUACUCACCGUGUCCUCUGUUGAUUUUUGUGAUGCCCAAAUUGUUUGAUUUCAUGAUGUGCUUAGAACUGUUGCCAGUGCAAGUUGAUUUACAUGUAAACCUAUUCUAUGAUGCAUUUCUUUCAUCCUUCAUGUGUGAAUCUGUGAGAUGAAUGCAACUACAACUAGCAAAAGAACAUUUUUUUCACAGGUAACCAGCAGCAUUGAUGGGCCGCAUUGUGCUACUCGUCACAUGUAACUCACUUGUGACGGGUUGUGACGCGACAAGUUAAAAGGGGGUUAACAUUACCUGUGACGGGUUGUCAUUUGUAAUCUGUCAGAGGUGAUUCAUACUAGUGACGUGCCUUUAGCCGUCAAAGAUAAGUUUAGUCAUCACUAACCACUCAUCUCUUACCAACGCCCUACCCGUUAGAGGUGACAGUUUGAGCCUGUCACCGAUGACCCAAUCUAGUGUAAUGAUUCUCAAUAUCAAAAUUGUAUAACUCGACGAGGUCAACCAUUCUAGAUUUGAUGACUAUUCUUUUGAUGUCACUAGCAAAAUGCCCAUGCGUUGCACCGGGUAAUGUCGCGUUGGAUAAAGUUUAACUGAACGAUUUUUUAAGCGGUAUAGUAUGACAAUAAUAGUGAUCAAGUAAUCGUUCAUAAUUUUCUAGCAAUUUUAAAAUGGCUCAAAAUAAUGCCAAGAAAAUUUUGUAAACGACUAAAUAAAUUAAAUCGAUGGAAUUAAAUAAAAUUCUAUUUCGACCUAUUACUUUUGUAACUGACCCAAAAAAUCGGAUCGGCCCGUUUAGCGCGAGCCGAUUGCACUACAAGUGGCCCAUCUACCGGCGACGGCCCGACACGCGGCAAAGGGCACGCGGCUCAGUUGUCUUCCAUGGCCCAAAGACUGCACGGCCCAAUAGCGGUGGCGGCCCGAUGCGGGGCCGAUCUGACCCAUCCGAUCUGAUGGACAGCUUGGAUUGGUCCCGCGCCAAUGAAAUCGCCGGCCGGAAGGGGAGGGUCCGAAAACCCUAACCCUAAUUGCCUUUCUUCCCUACUCUCCCUGAUCCAAUCUCUGGCGACGCGAGAGAGUGGACGGCGAUGAUCUAGUCUUUCUCCGCGUCUUUCCGUCUUCCACCCGAGUUGUCGCCGACUAGAUCAUCCACCGGCUCCAAGCCGUCAUUCAUGCUCGUGUGGAUCCGCCGUCGGCGCCUAGAUCCCAUCGUCUCUCGGCGAUAGCCGCAUGGCAGCUGCGAUGGCCAAGGCGCGUGGGCAGCAGCGAGACUGGUGGGCGGCGGAUCUGCCGGCUGGGGAGGCUUGAGGGCGCGGAGGUGGCUGAGUUUUGGCAGCCGCCUCACAAAGUUGCCGCCACCGCCUGCUUCCUCGACAUCGCCACUAGCGGGAGAUGUUAACAAGGCUAACAUGUAACGUAUGAGCCCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

409

LEP:

83.13%

ME_num:

29

MEP:

5.89%

HE_num:

53

HEP:

10.77%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.89

Avg Expression:

9.58

Tip: OSA-LNCN6972 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN2.627632839073791.17088342050633e-41
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN2.533154454998751.30203545781513e-43
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.560106425580753.25666444928154e-47
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA3.027915778759761.4443309884914e-39
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.478862598525721.87354339850287e-34
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.374139904022974.37503152592325e-30
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.961270093701283.07088035190026e-25
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.44166903297121.64394192186075e-10
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.329339005388882.14669684495102e-37
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN2.387830206329861.71359601737407e-41
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA2.232871300491528.64981552761381e-26
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.263763062950043.77520870325899e-39