Chr:
Chr8
Start:
7881868
End:
7883222
Strand:
-
Ref_name:
OSA-LNCN6971
Sequence
(OSA-LNCN6971.1):
CUAGGAACGACACGAGACUAGCAGGUAGCGAACCUUAUCUCUUCAUCGCUCAUUGUCGUCCACUCAUUUCCCUCACCCUUUCCUCCCUCCUCCCCUUCUUAUCUCUCUCUUCUCCAAGAAACCAGAGCUGCUUGCAAGUCCAAGCUCCUAGGUGAUGCAAGCUCCAAGGGGAGAGGGAGGUCUGGUCGGCAUGCGACGGUAGCGUGGUCGACACUGGAGUGGGAGGUCUGGCCAGCGUGCGAUGGCAGCGUGGUCGCCGAUGUCGCCUAGGCAGCAGCAAGCUCCUAGGUGAUGCAUGCAGCGACCCUACGCGUCAAGCUGACCAACCAGGCGAUGGCACCACUUCUUCUCUCGCGUUCAAUGUGUCGCCGUGGAGGCCGGCACCGUCAUGGACGUCGACGCCUCACCACCGGGAGCAUGUAGGGGAGAAGUACAAGAACGGAGAGAACCGCUGGUGGCAGAGUCGUGCCGCGCAGCGCCAAUCGCGCCACCGAGAAGAUCACUUCGAGCUAGCGGUCAACGGGUUUAUUUUGUUCGGGACGUUGCAACCGCAAGGCAGGGUGUCCUGUGCACACUUUUAAUCGACGGCUAACAGCGUGCGCGCAGAUCAGACGGUUCAUAUAUACGUCUGAAUUGACGCGUAGCGCUCUCCAUAGUUUGGUCCUUGUAAUAUUGUGCUUUACUAAAAUUUACACCAUUUACAAAUAUCAAAUAUAACUACAGGUGUGUAGUGCACAUGCACAUGAACAUGCAUUGUAUAUUGACUUUUCUAUAAUUGUGAAAGUUAGCCAUCGAAUAGUACUAUACCGAAAAAAAAAGAAAAAUCCAUCUGUCAGUCUCACAUCCGGUC
Sequence
(OSA-LNCN6971.2):
CUAGGAACGACACGAGACUAGCAGGUAGCGAACCUUAUCUCUUCAUCGCUCAUUGUCGUCCACUCAUUUCCCUCACCCUUUCCUCCCUCCUCCCCUUCUUAUCUCUCUCUUCUCCAAGAAACCAGAGCUGCUUGCAAGUCCAAGCUCCUAGGUGAUGCAAGCUCCAAGGGGAGAGGGAGGUCUGGUCGGCAUGCGACGGUAGCGUGGUCGACACUGGAGUGGGAGGUCUGGCCAGCGUGCGAUGGCAGCGUGGUCGCCGAUGUCGCCUAGGCAGCAGCAAGCUCCUAGGUGAUGCAUGCAGCGACCCUACGCGUCAAGCUGACCAACCAGGCGAUGGCACCACUUCUUCUCUCGCGUUCAAUGUGUCGCCGUGGAGGCCGGCACCGUCAUGGACGUCGACGCCUCACCACCGGGAGCAUGUAGGGGAGAAGUACAAGAACGGGUGUGUUGAGAUUUUUUUCAAUGUUUCAGAUAGUUUAGUUUGAUGUUUCUUUGGGUUGGAUCGAAUGUUGCAAUUGGAUUUUAGAUGGUGUUCCAUAACUUUGCUCCUUGAUGCAAACCACCAAUGGAAAUUUGUUGUUUCACAUGUGUGAAUGAAAUGUUUCGGUCAUGACUUGAAUAUGUUUCAGCAUUUUAACAAUGUGAAACAUUUUUUUCUAGUGGUGAAACAUUUUCGUAGUAGCGCUGAAAGAGCGCCCAAUUUUUUAUUUUUUGAUGUUUCACCCCAUGUACCAUAAUAUAGUUAGAUUUAAAAUGUUCCAGUGAGGUUGUCAGUAGUGUUUCAUUCUUUUUUUUCGUCGUAGUUGGAUGUGUUUCAUGUUUCAUUUUGUACCGUGUAGUAAAAUGUUUUAUUGCGUGAUUUGAUUGUGUUUCACUAUUUUUUUUACGCCGGCGACAGAGAGAACCGCUGGUGGCAGAGUCGUGCCGCGCAGCGCCAAUCGCGCCACCGAGAAGAUCACUUCGAGCUAGCGGUCAACGGGUUUAUUUUGUUCGGGACGUUGCAACCGCAAGGCAGGGUGUCCUGUGCACACUUUUAAUCGACGGCUAACAGCGUGCGCGCAGAUCAGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.08%
ME_num:
MEP:
16.06%
HE_num:
HEP:
53.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.73
Avg Expression:
34.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.23843969361763 | 3.07046210790254e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.10587837104854 | 4.05270550046871e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.90008496393494 | 1.25277671724262e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.09695768498159 | 1.46133097808092e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.9663562846421 | 1.59408994793654e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.12797935124502 | 5.32529806444005e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.64070718490782 | 1.31131371538633e-07 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.01883160188669 | 0.00134896014589271 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.25201070207784 | 1.91002689846656e-05 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.35405857313113 | 0.000498922360318295 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.26742543649912 | 0.000106365207756524 |
| 12 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -3.05289142763496 | 0.0140182042928058 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.08957003992659 | 2.40072471220727e-12 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.81469016002309 | 2.7227139957249e-08 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.25938454875415 | 0.000195657864267861 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.48166692479907 | 1.69854240311633e-07 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.93690717997416 | 0.000433800508466485 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.01969946045031 | 0.00714036018504991 |
| 19 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.93697849825588 | 0.000449557889235146 |
| 20 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.93711370962586 | 0.000435983995120116 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.7458270372393 | 5.05969246796125e-06 |
| 22 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.85071062888608 | 7.51086990665184e-10 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.37926012089532 | 2.59137065705853e-09 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.08277839526973 | 4.20900654322216e-09 |