Chr:
Chr8
Start:
7641218
End:
7648222
Strand:
-
Ref_name:
OSA-LNCN6967
Sequence
(OSA-LNCN6967.1):
AAGGGGAUGAAGGUAGAAGAAAGGGGUAAUUUGGUCCUAAAAAAGGUUAGAAAAUGUUGUGAAGGGGUACGUAGUGGCAUAUCUCCAAUACUUAUGAAAUUGUGAUGACAUGGUUAAAAAUAGGUGAAUAAUAAUGGCAUAUUUACAAACUCUGAAAUUUUCACUGAUUUAUGUCAAAAUUUUGUUGAGAUCACCCACUAAAUGCCAGCUAGUUGUGCUAUACUAUGGGUUCUAGAUGGCUAGGUAAUCUUCACCAAUCCCACUAAGACUUUUGAUGUCAUGCAUUUAGCAAGCAUUAACAAAAGUUCUCAAGAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.93%
ME_num:
MEP:
27.85%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
1.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.88371229065939 | 1.51167099356703e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.59866196115468 | 2.65791663720531e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.69612002615551 | 0.00676363706034852 |
| 4 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -2.95115844697553 | 3.53122106461052e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.83710561758516 | 0.00178010269795814 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.15429165810813 | 0.00636003067895214 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.18926757806592 | 0.000238249139081273 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.15618220862369 | 0.00103469851260763 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.05053932333418 | 0.0027969790654701 |
| 10 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -2.29806691975416 | 0.020832212813315 |
| 11 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | -3.09065923885424 | 0.00216890400373731 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.10476088168805 | 0.0251016850676115 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.07084074432639 | 0.00169564229445776 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | -1.10352312266404 | 0.0479431847839788 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.40832162018926 | 0.000170697621971959 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.36168521204697 | 5.89572407363001e-06 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -7.0389094174708 | 1.60533454084102e-05 |
| 18 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -4.3170403601956 | 0.000223113660499537 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.68943514568411 | 1.77322966891883e-08 |
| 20 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.30535099928286 | 0.00118088837579471 |
| 21 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 4.89572182640305 | 6.98716599524943e-15 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.58522429127406 | 2.12468693458173e-29 |