Chr:
Chr8
Start:
7122825
End:
7126179
Strand:
-
Ref_name:
OSA-LNCN6957
Sequence
(OSA-LNCN6957.1):
UUAUAGUGGCCGGGGUGCUACUUCCCACAACUGGCAUGCACCCAAACCCCACCGAAAACAGGUUUUAGGGGUUUUGAAAGAGGAAGAGAGGUGUAUGUCCAAUUCCACCAUAAUCCAACAAUUCCAUAGUGUCCAGGUGAUAUGAAUAUUCCCAAAGUCUAAAGUUAUAAAACCACCUAAUGUUGCCUAAUUAAUCAGCGAAGCAUCUACCUAAAUUCAUACUAGUGGAACCAUGAAUAGAGUACCCACUAGUUGGGGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.35%
ME_num:
MEP:
14.63%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
2.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.27909890530256 | 0.0179980525424538 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.51374722523181 | 2.42460182019033e-05 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.84829881491053 | 0.002616672191574 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.18080684361181 | 0.00175869871888344 |