Chr:
Chr8
Start:
6838462
End:
6838674
Strand:
.
Ref_name:
OSA-LNCN6946
Sequence
(OSA-LNCN6946.1):
GGCGGCGGCGCUACGGGGCACGGGAGAGGACGGGAGAUGGGGCAAACGAAAGAGAACGACGAGAGGAAGCUUUAUAUAGGCUUGGACUAGAGAGAUCUGACUCCAAACGAGAGGAAUCGAAGCCGAGGGGAAAGAUAGAGGAGAACGAGAGGAUCAAAACCCCUCAAAAAUCCGGAAGAAACGGGGCCGGAUUGGGUGCGGAUUUGAGGCGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.41%
ME_num:
MEP:
22.97%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
2.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.43240948571447 | 0.0374008871826696 |