Chr:
Chr8
Start:
5698213
End:
5699081
Strand:
+
Ref_name:
OSA-LNCN6919
Sequence
(OSA-LNCN6919.1):
UCCUCUCCUCUUUUCCCCAUCUCUCUUGAUCCUAAAUCCUUCACGCAGGCGACGAGAUCGCGCGCCUCAAGAAGGGGCCUCCCGGCGGACUCGGUAGCGGCGGAGGAGGAGGCUGCGGUGGUCGAGCGGCGCCACGGCCGGAGGGAGAUGGAGCUCGGGGGCAGAUGGCAGUGGGGGAGGGGGCAGGACGAAGAGGAGGAGAAGAGAGGGGAAGAGGAGUAUACGGCCGCGGCGGCGGCGGCGGCCAACGGCGGCGCCAUGGGAGGAAGGUGAGGUCCGUGCACCUCCAUAUGCUUCUUCCUCCCUCGUCGCGGCUCGGCUUCGGAUGACGAGCGGCGGCGGCGGUGGGAACAUCCGAAGGCAGCGAGGCAGGCACCCCUAUGGAAGAAGAAGACGCGGCGCAGGGAGGCCACCUUGGUCGUGUGCAUCUCCGCCGAAGCCGGCGGCGGCGACCCCUACGCCGAGCUAUGGAUCCAGGAAGAAGACGCGAGACGCGAGAAGAAGAAGACGACGGAAAAAGGAAAGAGAGGAUGGAAAAAGUGACAGCAGUGGUACGGUUCCAAUUUUAUAAAAUUUUAGUGGCACAUCUACAAAUACACGAAUUGUAAUGGUAUUUAUCUAAAUAGCCAUAUUUUCAAUGGCAUAGAUCAAAUUAACAAAAAAAAACGGAUUUGCUAUACAACUGUCGACAGUUAACAGGAAAAGGGAAAAAAAUCAGACGCGUGCAGCAGGGAUCAAACCCAACACAUCCAACUUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.54%
ME_num:
MEP:
70.53%
HE_num:
HEP:
20.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.76
Avg Expression:
9.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.44358220390255 | 5.26805267095652e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.80574399782157 | 0.030554118768858 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.65803461306331 | 0.0327413699650769 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.03408242351687 | 0.0394879279979491 |