Chr:
Chr8
Start:
5533815
End:
5535867
Strand:
+
Ref_name:
OSA-LNCN6914
Sequence
(OSA-LNCN6914.1):
AAUGUUUGAAACCUAAAAAUUUAAUAUUGUAUCAAAUACUUAACAAAAAUAGUGCAAAUAUAUGUAAUUUUAGCAAUACUGACAUUUAAACUCACUAAAUUGUUGCCUGAUCCCAAAAUAGACAAUUCAUCAUAUAGAGGAUAGUUGUUAGAGUCAACAUUUGCAUAUGCUGUAUUUCCUGUAUUGGUUAUUUUUUUCUGAUAAAAAUGGCAUUUGUUAGUGUAAAUUUAAAACUUUAAUGUAAAUGACGCGAUAAUGUUACUUACUCCAUCUUUUAAAUUUGAAAAAAAAUCAAUCUCUGCAUUUGAUUGCUUUUUUAGUGUGAUCUGUUGAGAUCAUUUUUCUCAAUCCUUUGAUCUGGUAUAAAUGAAUUGAAAAGAUAAUAAAAUGCUAAAUCUGUAUGAAACAAAUGAAUAUUUGCAUUUAAUUUUGAUCAAGUAAUUAAAGGAGGUAUGCAUGUAAUGAAUUUGAAUGAAGCAAGAUAAUUAUCAUUUACCUGGGUUUGAUGCUUUUUUGUUCCUAUGAAUGGUUUAUUCUUUUUGUGAUAAAUCAUUUGUGAUACCUGCAAAUAAAAAGUUUGUUUGUGACUUGGAUUAAAAUAUAUAACAUUCUGAAAUUCAAAUUCUUAAUUUUGUAGUUUGAUGCUGGAACUAUUCAUUCCACAAAUUCCUGAAUUUGAUUAUUUCUGAUGCCUGCUAUCAACAUCUGUAGUUUGAUUAGUUAAUAUGGUCCAGUACUCCUGACUUGUCAACUUCAAUGGCAAUAUACUAAUAUGCACAGAAAAGGCUGUAGGAUUUGGGUUGAACCAGGCGCACCGGCCCUCAUCCACGCUGGCUCCUUUAUUCCACGCUGUCUCGCGCGCACGCGUUCACCAUGUUGCCGAAGUUGGUUGCGAUAGAUGCCCCAAUCGAAUCGCGCGGGAGAAACCCACAACCCACCAUCGUGAUCCGAUUAUCUAGUCAAUUUCGUAUGUGCAGCGACGGCUGUGGGUGUUCACGCAGAGAGCAAUCUCGUUCUCAUGGCGAGCGGCAGGGCAGGACGUUCUCAGGCGCAGGCGCAAGAGCACAUCAGGAUCUAGUUCCUAGGUGCAGCAGGAGAAGGUGUUGAGGUUUUGACGUGGCAGGAAGGGAGGCUCUCAAGGUGCUGUUGCCUGUAGUUGCUUGUUCAAAGGUAAUUAGUUAAGCUUUUAAGUAUAAAUUCAUAUGAGGAACACAGGUGUUGUUUGAUCAUUAUCUUAAUGAUCAACUUUCUACCUGAGCACCUACCACAUACAGCCGCGGCUGCAUAGGCGAAACAAAUGUUCGACUAGAUGAUCGGAUCACGAUGAUGGGUUGUGGGCUUCUCCCGCGCAAUUCGAUCGGGGAAUCGCAACCAACUUCACCAACGUGGUGAACACGCGCGAGACAGCGUGAAAUAAAGGAGCCAGCGUGGAUGAGGGCCGGUGCGUCUGGUUUAGUCCAAAUCCCACAGCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.68%
ME_num:
MEP:
27.24%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.86
Avg Expression:
6.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.3341718388954 | 1.45283122733391e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.39303027015852 | 1.32723265226673e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.57211120919955 | 6.87270166118759e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.88866905323858 | 3.81413286230816e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.48399557619446 | 0.000554399790762344 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.89653735951394 | 1.75496933820437e-10 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.81431692657733 | 0.0027747153547573 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.90694794347884 | 0.000753956471454061 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.47109624211301 | 3.58598022081561e-10 |