Chr:
Chr8
Start:
5031440
End:
5032573
Strand:
-
Ref_name:
OSA-LNCN6908
Sequence
(OSA-LNCN6908.1):
GUUAAUUAAUAUAAAGAACGGAAUCUUAAGCUAGAACUAAAAUAUGCUGCACUGUUCGGUUCAAGCUUCAUCAUCGUCUGUCUCCGUUUUUAGAACAAAUGGUCAACCUUUUAAAUGUUGACCAAUAAUUAGUCAAACUCGAGCGUGAGUUUCAAAACUUCAAAUUUUGGGUAUCAACAUAGGCUGUGUUUAAUUCACAAAUAGAAUUCAAUAAUUUUGUGAUCUUUUCUUGUAUUGGUUUUUAGUACUUGGCGUGUGUUCCUGUCCUUUUAGGCCUGGUUUUUAUAACUUUUUUGUCAUGCGUUUUUAUUUGUAUGAAUUGGUGUAAUAAUUAGCUGUAACUCAUUGAUCAAAGGCUAGGAUUUAUCUUUAAAAAAAAGUCCACAAUUCAUUAUGAGCUUUUGAUGGCUGCAAGCGGAGUACGUGAUGAUAGGCCUUUGAAGGCUGGUAGUGGUUGGGCUGCUUUUAAUGGGCUUUUAUAUGUGAUAGCCAAUGGGCUGCUCAGCACUUUGGGGCCCCGUGGGUCAUCUGGGGCGAAGAUGCCGCCCCGCCCAGUCCCCGCAUGAAGUCGGGGCCCCGUCGCGUAAGACCCGCAGGUGAAGAUUUAGCCCCCCCUUGCCCCGUAGGAGUGGGGAACCUGUCAGGGCCCUGCCCCCAACAGGGAAAUUGCCAUCUCUAAUCGUGAUAUUUGUUUUAAUUAUCGAUUGAAAUCUUUGGGUUGAAGCUAGUUUAAAACUUAAAUUUAGAAUUAAUUUGAACGGUCUUUUGUCACUUUCGUUUCUCAGUUAAAGCUUUAUCGCCAUUUAGGACCACUCAGAGUAGCUCUAAAAUAAAAAAUAUAUAUUUUUUUUAUUUAUUUAACCACACAUUUCUUCAGCUUUUAAGCUGCAACCAAACAAAGUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.4%
ME_num:
MEP:
29.67%
HE_num:
HEP:
7.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.94
Avg Expression:
13.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.80611041107207 | 4.24904250430796e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.66367299208179 | 0.00718909734604455 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.4043321295909 | 0.032250583010026 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.05832539888951 | 0.000376679869143825 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.60647877742682 | 0.00497546015072805 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.03261318733562 | 5.55898467496264e-18 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.41557624174892 | 0.0400189487229413 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 3.70163604906862 | 0.0012526168246282 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.51864387649433 | 6.74530283341334e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.60064874247593 | 6.40668861290777e-05 |