RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN6907

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

5027331

End:

5030399

Strand:

+

Ref_name:

OSA-LNCN6907

Sequence
(OSA-LNCN6907.1):

UGGUGUCUGUAUGACUGCUUAAGUUGCAGGGACUAUAACCACUGCAGUUGAUCCCAAUCCGGGUCAUGUCAUCAUGUGAUACUGUGAUUAAGCUGUCGUUUAGCCCCGCCUUGGGGAUGGAAGCUUCGUGGAAACUACCUAUACUAAGAUGAAGGUUAAGGUCACGGUAACCUGACCGGACGGUACUUGUACCCUAGGCCUAUAAAAAGCCCAUGCCCACCCGGCCUCGGUGCCUCAUCCUAGCCUCCCUUUCGCCUACCACGAAAUUCACUGGGUUUCGACUUCGUCUCCUCAUCGUCGAAACGGCCUUUCACUCCAAUUGGUUAUUUUUCUGAGGUAUCCAGCUUUAUUUCUCGAAUCUCCUCCUCUCUUCGAUUUUAGCCACUUUACAUGGUUGAUUGAAUUCGUUCUAUGUACAGUUAAACCAAUCUAUUUUCAGUUGGUAACGUCCUCUCUUCGUAACGGUUGGUUCAUACUAUACCAAUCUGUUUUUAAGUUUACCCUCGCUUCCUACGGGCACAGCCCAAGGCGAUCAGGCGAUCGGGUCAGCACGGCACGGUCAAUACUUCGGGCCGUGCCGUGCCGGUCCACGGGCUGCACCUCAGCGUCCAGGCACGACCCACCGGAAGCCGGGCCGUGCCGUGCCGGUCCACCAAAGGCACGAGCGGUCCAUCAUUCCUUUUUUAAAAAUAAAUCUAUUUCUCCUCCCUCUUCUUUGGGCCGUGGCAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAGCUAAAUUAAGUCUAUUUUACGUCUCUACUCUUUGGGCCGUGUCAUAUAGUAAGUCUAUUUUGCCUCCAAUUCUUUAUGAUAUGUCUUACAUAUGGUGAGAAUAAGUCCGUUUCGCAACCCUACACUUCGGGCCGGGCCGUGCGGGCCCAGCGUGCCAAGGUAGCAGCCCAAGUACGACACGGCUGUUGGGCUGGGCUGGCACGGGCACGACCAGAGUCAGGCCAUGCUGGGGCCAAAAUUACCGGGCCUUGGACGCAUGGCCAUAUAUGGCCAGUUUAAUCGGUUUAGUUCAACCUGCAAAAGCCGCCUUUUAAAUUAAGUCAAAUCUGUUUUCAUCACUUCUCGUAUUUUUCUUUAUCUACCUCUUUUUUUGUUUGGAUAAUAAGAUCAUCUGGGUUUGCAGAAGAUUUCUUUUCUCAAAUCUCUGUUGCCGGAAAGGUAGUGCGUAUGAACUUCCGCAUACAAUUUGGUUACUUCCGAAUUCGCAAUUAAUUUGUGGAGCAGGAAGACAUAAAUUUGGAAUACUCAGAUCUUCAGACUUGGUUAUGCUCGUAGGCUACCCAAGUCUUUUAACGCUAAUUAUUCCUUUACAAAAGCUGUUCAAUCCUUUCUAAAGAUGAAGGUGUUCUCUGAGAAGCGCAGGGGGAAAAGUAUAUCUCUUCCCUUUGGAAUAAAGGGAUUAGGAAAAUUUAUGUGUGGUUUAGAAAUUAAUAGCCUCUUUUACAUGUGAAAUCCUGCCAUUAAUCCUUUUAUCAUUUGCAAAUCGAAACUGCUAAAUGACUGAUGAGUGAAAACUGUCAAAUUUUUAGGCCGUCGAUUCCGCUUUAAGAUUUGUGCUGAGAUAUUUUGCUACCGGAUCUAAACCCUCUUUUCACAAGCUAGCCACAUCAUCAUAUGUUUAUGGAACAAGGUUUCGGAACAAGGUUUUAGCCAUGAGGAUCCAUUGCAGUCUCUGCCAAACUGGCUUCCCGACGGGGAUGAAAAGAAAUAAGAGUUCGAGUAGGCCGUAGUGGUUAUCUUAUUAUCCGUUGAUUGGCUUAUCGCAGACAAUUUUUUAAUUUUAAAUAUUACUUUUGAGUUAAUUUUUGAGAAUUUGUAUUGCUGUUUGUAUUUCAAUCUUGUCUUUUAGACUACCGAGGAUAUCCUCAAUGUAUAUGUAACAAUAAGCAAUAGUGGUAGGGCCUAGUGCAGGAAGCACUAACUAUGGUAAACUUCACAAUGGUAAAAGAUUAUUAGAUGUGGGUCCCAUGUCAAACAUAACAAUGGGUGUGAGUGGUGGUAAAAGGAGUAUUAGAUGUGGGUCUCAUAUUAAACAUAGCAAUGGUGUGAAUGGUUAUAGUGUACUAUAAAUCAGUAGCAGGUACUAUCGUGUAGGGGUGAACAAAAAACUCGAAACUCGUGGCCCGGAUCGGCUUGUAGCAAGCUCGAAUCGGAUCAAUUUGAACUCGUAAUCUUAAUGAGUCGAGUCGAGCUAGCCUUUUAGCUCGUUAAUAUAAAAUAUCACCAUAUCUAUAUGAACUUAGUGUUUCUUGACUAGUGCGUAGUUUUUUUAGUUACAUCAAAACUAUUCAUAUUUAGUGAGUAUUAUUUUAGUUAAUGUUUAUUAUUUAUGUUAAUACAUAAGAAAAUGUUAAAUAAAAUUAUUAAUAUGAUAUUAAUGAGAUAUAGCUCGUUAACGAACCUAAAGAGCUUAACGAGCUAGCUCGCGAGCCG

Sequence
(OSA-LNCN6907.2):

CUAGCCUCCCUUUCGCCUACCACGAAAUUCACUGGGUUUCGACUUCGUCUCCUCAUCGUCGAAACGGCCUUUCACUCCAAUUGGUUAUUUUUCUGAGUUAAACCAAUCUAUUUUCAGUUGGUAACGUCCUCUCUUCGUAACGGUUGGUUCAUACUAUACCAAUCUGUUUUUAAGUUUACCCUCGCUUCCUACGGGCACAGCCCAAGGCGAUCAGGCGAUCGGGUCAGCACGGCACGGUCAAUACUUCGGGCCGUGCCGUGCCGGUCCACGGGCUGCACCUCAGCGUCCAGGCACGACCCACCGGAAGCCGGGCCGUGCCGUGCCGGUCCACCAAAGGCACGAGCGGUCCAUCAUUCCUUUUUUAAAAAUAAAUCUAUUUCUCCUCCCUCUUCUUUGGGCCGUGGCAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAGCUAAAUUAAGUCUAUUUUACGUCUCUACUCUUUGGGCCGUGUCAUAUAGUAAGUCUAUUUUGCCUCCAAUUCUUUAUGAUAUGUCUUACAUAUGGUGAGAAUAAGUCCGUUUCGCAACCCUACACUUCGGGCCGGGCCGUGCGGGCCCAGCGUGCCAAGGUAGCAGCCCAAGUACGACACGGCUGUUGGGCUGGGCUGGCACGGGCACGACCAGAGUCAGGCCAUGCUGGGGCCAAAAUUACCGGGCCUUGGACGCAUGGCCAUAUAUGGCCAGUUUAAUCGGUUUAGUUCAACCUGCAAAAGCCGCCUUUUAAAUUAAGUCAAAUCUGUUUUCAUCACUUCUCGUAUUUUUCUUUAUCUACCUCUUUUUUUGUUUGGAUAAUAAGAUCAUCUGGGUUUGCAGAAGAUUUCUUUUCUCAAAUCUCUGUUGCCGGAAAGGUAGUGCGUAUGAACUUCCGCAUACAAUUUGGUUACUUCCGAAUUCGCAAUUAAUUUGUGGAGCAGGAAGACAUAAAUUUGGAAUACUCAGAUCUUCAGACUUGGUUAUGCUCGUAGGCUACCCAAGUCUUUUAACGCUAAUUAUUCCUUUACAAAAGCUGUUCAAUCCUUUCUAAAGAUGAAGGUGUUCUCUGAGAAGCGCAGGGGGAAAAGUAUAUCUCUUCCCUUUGGAAUAAAGGGAUUAGGAAAAUUUAUGUGUGGUUUAGAAAUUAAUAGCCUCUUUUACAUGUGAAAUCCUGCCAUUAAUCCUUUUAUCAUUUGCAAAUCGAAACUGCUAAAUGACUGAUGAGUGAAAACUGUCAAAUUUUUAG

Sequence
(OSA-LNCN6907.3):

CCUCCCUUUCGCCUACCACGAAAUUCACUGGGUUUCGACUUCGUCUCCUCAUCGUCGAAACGGCCUUUCACUCCAAUUGGUUAUUUUUCUGAGUAUUCUUUUUCAGGAACAAGGUUUCGGAACAAGGUUUUAGCCAUGAGGAUCCAUUGCAGUCUCUGCCAAACUGGCUUCCCGACGGGGAUGAAAAGAAAUAAGAGUUCGAGUAGGCCGUAGUGGUUAUCUUAUUAUCCGUUGAUUGGCUUAUCGCAGACAAUUUUUUAAUUUUAAAUAUUACUUUUGAGUUAAUUUUUGAGAAUUUGUAUUGCUGUUUGUAUUUCAAUCUUGUCUUUUAGACUACCGAGGAUAUCCUCAAUGUAUAUGUAACAAUAAGCAAUAGUGGUAGGGCCUAGUGCAGGAAGCACUAACUAUGGUAAACUUCACAAUGGUAAAAGAUUAUUAGAUGUGGGUCCCAUGUCAAACAUAACAAUGGGUGUGAGUGGUGGUAAAAGGAGUAUUAGAUGUGGGUCUCAUAUUAAACAUAGCAAUGGUGUGAAUGGUUAUAGUGUACUAUAAAUCAGUAGCAGGUACUAUCGUGUAGGGGUGAACAAAAAACUCGAAACUCGUGGCCCGGAUCGGCUUGUAGCAAGCUCGAAUCGGAUCAAUUUGAACUCGUAAUCUUAAUGAGUCGAGUCGAGCUAGCCUUUUAGCUCGUUAAUAUAAAAUAUCACCAUAUCUAUAUGAACUUAGUGUUUCUUGACUAGUGCGUAGUUUUUUUAGUUACAUCAAAACUAUUCAUAUUUAGUGAGUAUUAUUUUAGUUAAUGUUUAUUAUUUAUGUUAAUACAUAAGAAAAUGUUAAAUAAAAUUAUUAAUAUGAUAUUAAUGAGAUAUAGCUCGUUAACGAACCUAAAGAGCUUAACGAGCUAGCUCGCGAGCCG

Sequence
(OSA-LNCN6907.4):

UCGCCUACCACGAAAUUCACUGGGUUUCGACUUCGUCUCCUCAUCGUCGAAACGGCCUUUCACUCCAAUUGGUUAUUUUUCUGAGGCCGUCGAUUCCGCUUUAAGAUUUGUGCUGAGAUAUUUUGCUACCGGAUCUAAACCCUCUUUUCACAAGCUAGCCACAUCAUCAUAUGUUUAUGGUUUCGGAACAAGGUUUUAGCCAUGAGGAUCCAUUGCAGUCUCUGCCAAACUGGCUUCCCGACGGGGAUGAAAAGAAAUAAGAGUUCGAGUAGGCCGUAGUGGUUAUCUUAUUAUCCGUUGAUUGGCUUAUCGCAGACAAUUUUUUAAUUUUAAAUAUUACUUUUGAGUUAAUUUUUGAGAAUUUGUAUUGCUGUUUGUAUUUCAAUCUUGUCUUUUAGACUACCGAGGAUAUCCUCAAUGUAUAUGUAACAAUAAGCAAUAGUGGUAGGGCCUAGUGCAGGAAGCACUAACUAUGGUAAACUUCACAAUGGUAAAAGAUUAUUAGAUGUGGGUCCCAUGUCAAACAUAACAAUGGGUGUGAGUGGUGGUAAAAGGAGUAUUAGAUGUGGGUCUCAUAUUAAACAUAGCAAUGGUGUGAAUGGUUAUAGUGUACUAUAAAUCAGUAGCAGGUACUAUCGUGUAGGGGUGAACAAAAAACUCGAAACUCGUGGCCCGGAUCGGCUUGUAGCAAGCUCGAAUCGGAUCAAUUUGAACUCGUAAUCUUAAUGAGUCGAGUCGAGCUAGCCUUUUAGCUCGUUAAUAUAAAAUAUCACCAUAUCUAUAUGAACUUAGUGUUUCUUGACUAGUGCGUAGUUUUUUUAGUUACAUCAAAACUAUUCAUAUUUAGUGAGUAUUAUUUUAGUUAAUGUUUAUUAUUUAUGUUAAUACAUAAGAAAAUGUUAAAUAAAAUUAUUAAUAUGAUAUUAAUGAGAUAUAGCUCGUUAACGAACCUAAAGAGCUUAACGAGCUAGCUCGCGAGCCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

89

LEP:

18.09%

ME_num:

198

MEP:

40.24%

HE_num:

204

HEP:

41.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.79

Avg Expression:

19.09

Tip: OSA-LNCN6907 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.593570441007580.0178537539600228
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.249574159636820.000123908673137192
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA5.817424457815773.71120105132225e-35
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.44501409080720.000172820640570311
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.856201477363696.57653649669267e-07
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA2.214476204425960.000770116384747419
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN2.11430591893220.0014560984712108
8Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.350402169921333.14844945900721e-05
9Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.879301850456260.000278761272534654
10Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"1.130151895795140.00151118969650828
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2561.212736481265740.04755899457512
12Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA3.133066969685234.64664618884857e-09
13Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"4.468463829464732.4080222097926e-15
14Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"1.458014037201210.00626077857095504
15Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.566023495630513.50131194518013e-06
16Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.809185578404840.0035117995006077
17Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_121.110138034058010.0406774732524758
18Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73412.167636243621710.0044854173886081
19Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73422.153159133903150.00047963764466818
20Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae2.374855964383552.4267263216294e-24
21Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-3.377126781264418.46600622973394e-09
22Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day-1.06657637530940.0144882828211946
23Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA2.326471499575690.000169629323152364
24Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA3.391740088560423.18631819739557e-13