Chr:
Chr8
Start:
4385596
End:
4389278
Strand:
-
Ref_name:
OSA-LNCN6891
Sequence
(OSA-LNCN6891.1):
GCUGUCAAACACUAAAGAUUCCAUGGCCGGCGCCGCGUGGGUGCCAUCCUGCCCUGCUUUCAUCCUGCACAACGGUCACAGGUUCAGAGUAGGAAUGUGCAAUGCUUUCUAGAUUUGGGUAUAAGAGAUUUAUCAAAUCUUAUAAGUAUAUUAUAGCGACUUUCCGGUCGUCAGUGAGGUGGGAGGGGGUCCAACUCUCAUCCACUAGUAGGGUUAGUUUUAGAUUUUAUCGGGUUCAUCUUGUUUUCAGGUUAAUCCUUUAGUUUCCCUUUUCAUGAUCAGCUCGAGGUCGUCGUCAAGCCAUCGAUGAACCUCUUCCUUCGGACCUCUUUGGGCGAUGUUGGUGGUGGUCUUCGCUACUAUUGUUAUUCUCCAACAAGACCUAAAGGUGAGCUUAAAUAAGAGGCUUGUUAGCUCAAACAAGGCAUAUGGGAAUGAGUCAGUUCAACUCCUGCGUCAGCCACCUGUUCCUUCUCCGGCGACCCUCCUGCUCUAGCGACGGUCUUCUUCCUCGACUACGACGAUGGUUUAAAAGGGCAACUGAAGUGUAUCUCUACUUGUCUAGGUUGCUUUAACCUCCAUCCUUCGGAGGUCCCAUUUGGGUUCGCAACUGGGUUUCAUCUUUUGCCGCUUGCCAUGGUUUUUCUGCUCCUAUCGUUGUUAUCUGAGUUCUGGCUGUUGCAGUUGCAAGAGAUGCAAAGUCAAGGACCUGAUUGCUUUUUCUUCUCGUUGUUGAAUCCUUUGCAUUUUUCAGAACUUAUGUGUAAUUUGCUCAUUCUCAAGGGACCUCUCUGUAAAACUGGAUGUAUUCCCACUUUGCUUAUAUACUAUAUGCUGAUUUGCUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.57%
ME_num:
MEP:
18.7%
HE_num:
HEP:
70.53%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.83
Avg Expression:
84.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.35257642914611 | 1.68548070957404e-12 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.53404410734903 | 3.81097261178291e-16 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.30723361117908 | 0.000124445320197173 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.51627856578269 | 6.88247074304191e-15 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.62345076422479 | 3.67476054253785e-17 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.11943473098129 | 0.00351233177425361 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.05082671502256 | 0.00479910988816915 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.05072839001144 | 0.00484774028565584 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.05065321197211 | 0.00481460948109842 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.51620441238718 | 0.00714188958050886 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.8324718408757 | 1.14950391486901e-05 |